Genome sequence of a novel partitivirus identified from the oomycete Pythium nunn

Archives of Virology
Kazuki ShibaTomofumi Mochizuki

Abstract

The mycoparasitic oomycete Pythium nunn isolate UZ415 contains two double-stranded RNAs (dsRNAs) of different sizes. The 1707-nt dsRNA1 and the 1475-nt dsRNA2 potentially encode an RNA-dependent RNA polymerase (RdRp) and a coat protein (CP), respectively, with sequence similarity to the RdRp and CP of gammapartitiviruses (< 57% and < 36%). Phylogenetic analysis of the deduced RdRp amino acid sequences indicated that the virus identified from P. nunn is classifiable as a distinct member of the genus Ganmmapartitivirus in the family Partitiviridae. This virus isolate is hereby named Pythium nunn virus 1 (PnV1).

References

Mar 11, 2005·Mycological Research·C André Lévesque, Arthur W A M de Cock
Jan 27, 2007·Science·Luis M MárquezMarilyn J Roossinck
Mar 18, 2011·Virology Journal·Marion Heller-DohmenOtmar Spring
Dec 8, 2017·The Journal of General Virology·Eeva J Vainio Ictv Report Consortium

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Citations

Feb 15, 2019·Journal of Virology·Maliheh SafariMarilyn J Roossinck
Aug 1, 2019·FEMS Microbiology Ecology·Suvi SutelaEeva J Vainio
Dec 6, 2019·Viruses·Assane Hamidou AbdoulayeIoly Kotta-Loizou
Aug 8, 2020·Frontiers in Microbiology·Leticia BotellaThomas Jung
Apr 14, 2021·Environmental Microbiology·Anna PoimalaEeva J Vainio

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Datasets Mentioned

BETA
LC371062
LC371063
AY705784
KF372436
FJ816271
AM999771
AB569997
GQ280377
HM565953

Methods Mentioned

BETA
electrophoresis

Software Mentioned

MEGA
Velvet
clustal W
BLASTp

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