Genome sequencing and analysis of Alcaligenes faecalis subsp. phenolicus MB207

Scientific Reports
Zarrin BasharatYigang Tong

Abstract

Bacteria within the genus Alcaligenes, exhibit diverse properties but remain largely unexplored at genome scale. To shed light on the genome structure, heterogeneity and traits of Alcaligenes species, the genome of a tannery effluent isolated Alcaligenes faecalis subsp. phenolicus MB207 was sequenced and assembled. The genome was compared to the whole genome sequences of genus Alcaligenes present in the National Centre for Biotechnology Information database. Core, pan and species specific gene sequences i.e. singletons were identified. Members of this genus did not portray exceptional genetic heterogeneity or conservation and out of 5,166 protein coding genes from pooled genome dataset, 2429 (47.01%) contributed to the core, 1193 (23.09%) to singletons and 1544 (29.88%) to accessory genome. Secondary metabolite forming apparatus, antibiotic production and resistance was also profiled. Alcaligenes faecalis subsp. phenolicus MB207 genome consisted of a copious amount of bioremediation genes i.e. metal tolerance and xenobiotic degrading genes. This study marks this strain as a prospective eco-friendly bacterium with numerous benefits for the environment related research. Availability of the whole genome sequence heralds an opportu...Continue Reading

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Citations

May 11, 2019·Microbiology Resource Announcements·Michael J ZillioxCatherine Putonti
Sep 17, 2021·Applied Biochemistry and Biotechnology·Oluwaseyi Samuel OlanrewajuOlubukola Oluranti Babalola
Mar 14, 2021·Probiotics and Antimicrobial Proteins·A I Gutiérrez-FalcónJ L Martín-Barrasa
Oct 1, 2021·Microbiology Resource Announcements·Henry Marcel Zalona FernandesRubens Clayton da Silva Dias

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Datasets Mentioned

BETA
SRR5809679
OQV32989.1
OQV32923.1
MB207

Methods Mentioned

BETA
PCR

Software Mentioned

BLAST
IDBA
Trimmomatic
IMEx
SPSS
BPGA (
Bacterial Pan - genome Analysis tool )
PHAST
UD
Usearch

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