Genome-Wide Analysis of the Shi-Related Sequence Family and Functional Identification of GmSRS18 Involving in Drought and Salt Stresses in Soybean

International Journal of Molecular Sciences
Shu-Ping ZhaoWei-Jun Zheng

Abstract

The plant-special SHI-RELATED SEQUENCE (SRS) family plays vital roles in various biological processes. However, the genome-wide analysis and abiotic stress-related functions of this family were less reported in soybean. In this work, 21 members of soybean SRS family were identified, which were divided into three groups (Group I, II, and III). The chromosome location and gene structure were analyzed, which indicated that the members in the same group may have similar functions. The analysis of stress-related cis-elements showed that the SRS family may be involved in abiotic stress signaling pathway. The analysis of expression patterns in various tissues demonstrated that SRS family may play crucial roles in special tissue-dependent regulatory networks. The data based on soybean RNA sequencing (RNA-seq) and quantitative Real-Time PCR (qRT-PCR) proved that SRS genes were induced by drought, NaCl, and exogenous abscisic acid (ABA). GmSRS18 significantly induced by drought and NaCl was selected for further functional verification. GmSRS18, encoding a cell nuclear protein, could negatively regulate drought and salt resistance in transgenic Arabidopsis. It can affect stress-related physiological index, including chlorophyll, proline, ...Continue Reading

References

Dec 10, 1998·Nucleic Acids Research·K HigoT Korenaga
Sep 16, 2003·Plant Physiology·Sergio de la Fuente van BentemBen J C Cornelissen
Jan 13, 2005·Plant Physiology·Sophia L StoneJudy Callis
Jun 3, 2006·The Plant Journal : for Cell and Molecular Biology·Joel J SohlbergEva Sundberg
Jun 3, 2006·The Plant Journal : for Cell and Molecular Biology·Sandra KuuskEva Sundberg
May 26, 2009·Journal of Plant Physiology·Pierluigi MaestriniLucia Natali
Jan 7, 2010·Plant Biotechnology Journal·Henrik LütkenSøren K Rasmussen
Aug 14, 2012·Nature Chemical Biology·Bert De RybelTom Beeckman
Nov 8, 2013·Plant Physiology·Qingyun BuEnamul Huq
May 6, 2014·Frontiers in Plant Science·Dortje GolldackNina Probst
Nov 6, 2014·PloS One·Wankun DengYu Xue
Dec 17, 2014·Bioinformatics·Bo HuGe Gao
Apr 9, 2015·Plant Signaling & Behavior·Joseba Sanchez-ZabalaDaniel Marino
Mar 24, 2016·Molecular Biology and Evolution·Sudhir KumarKoichiro Tamura
Oct 8, 2016·Cell·Jian-Kang Zhu
Nov 15, 2016·Nature Genetics·Helmy M YoussefThorsten Schnurbusch
Dec 9, 2016·Molecular Plant-microbe Interactions : MPMI·Md Shakhawat HossainKrzysztof Szczyglowski
Jul 5, 2017·The International Journal of Biochemistry & Cell Biology·Orit Shaul
Dec 20, 2018·International Journal of Molecular Sciences·Wen-Yan ShiXiao-Hong Zhang
Mar 3, 2019·International Journal of Molecular Sciences·Akhtar AliDae-Jin Yun

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Methods Mentioned

BETA
transgenic
PCR
chip
RNA-seq
confocal microscopy

Software Mentioned

ClustalX
Promoter 2 . 0 Prediction
Primer Premier
Heml
MEGA7
Gene Structure Display Server
Adobe Illustrator
NEW PLACE
DNAMAN
Graphpad Prism

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