Genome-Wide Association Study for Nine Plant Architecture Traits in Sorghum

The Plant Genome
Jing ZhaoMaria G Salas Fernandez

Abstract

Sorghum [ (L) Moench], an important grain and forage crop, is receiving significant attention as a lignocellulosic feedstock because of its water-use efficiency and high biomass yield potential. Because of the advancement of genotyping and sequencing technologies, genome-wide association study (GWAS) has become a routinely used method to investigate the genetic mechanisms underlying natural phenotypic variation. In this study, we performed a GWAS for nine grain and biomass-related plant architecture traits to determine their overall genetic architecture and the specific association of allelic variants in gibberellin (GA) biosynthesis and signaling genes with these phenotypes. A total of 101 single-nucleotide polymorphism (SNP) representative regions were associated with at least one of the nine traits, and two of the significant markers correspond to GA candidate genes, () and (), affecting plant height and seed number, respectively. The resolution of a previously reported quantitative trait loci (QTL) for leaf angle on chromosome 7 was increased to a 1.67 Mb region containing seven candidate genes with good prospects for further investigation. This study provides new knowledge of the association of GA genes with plant architec...Continue Reading

References

Oct 6, 2017·Journal of Experimental Botany·Diego OrtizMaria G Salas Fernandez
Nov 11, 2017·Journal of Experimental Botany·Maria Betsabe Mantilla-Perez, Maria G Salas Fernandez
Mar 3, 2018·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Junji SuShuxun Yu
Sep 12, 2019·PLoS Computational Biology·Adam ConnSaket Navlakha
Oct 22, 2018·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Emma MaceDavid R Jordan

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Related Concepts

Biological Markers
Genome-Wide Association Study
Study
Quantitative Trait Loci
Sorghum bicolor
lignocellulose
Crops, Agricultural
Genome
Genes
Candidate Disease Gene

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