DOI: 10.1101/458141Feb 21, 2019Paper

Genome-wide data for effective conservation of manta and devil ray species

BioRxiv : the Preprint Server for Biology
Jane HosegoodG. Carvalho

Abstract

Practical biodiversity conservation relies on delineation of biologically meaningful units, particularly with respect to global conventions and regulatory frameworks. Traditional approaches have typically relied on morphological observation, resulting in artificially broad delineations and non-optimal species units for conservation. More recently, species delimitation methods have been revolutionised with High-Throughput Sequencing approaches, allowing study of diversity within species radiations using genome-wide data. The highly mobile elasmobranchs, manta and devil rays (Mobula spp.), are threatened globally by targeted and bycatch fishing pressures resulting in recent protection under several global conventions. However, a lack of global data, morphological similarities, a succession of recent taxonomic changes and ineffectual traceability measures combine to impede development and implementation of a coherent and enforceable conservation strategy. Here, we generate genome-wide Single Nucleotide Polymorphism (SNP) data from among the most globally and taxonomically representative set of mobulid tissues. The resulting phylogeny and delimitation of species units represents the most comprehensive assessment of mobulid diversit...Continue Reading

Software Mentioned

TreeAnnotator
SNAPP
DensiTree
FastQC
BEAST
Stacks
ClustalW
RAxML
TreeMix
VCFtools

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