Genome-wide expression analysis suggests glutaredoxin genes response to various stresses in cotton.

International Journal of Biological Macromolecules
Waqar Afzal MalikWuwei Ye

Abstract

Oxidative stress reflects an imbalance between the systemic manifestation of reactive oxygen species (ROS) and a biological system's ability to readily detoxify the reactive intermediates or to repair the resulting damage. Glutaredoxins (GRXs) are ubiquitous oxidoreductase enzymes involved in diverse cellular processes and play a key role in oxidative stress responsive mechanisms. This study was aimed to explore the structure-function relationship and to provide a framework for functional validation and biochemical characterization of various GRX members. In this study, our analysis revealed the presence of 127 genes encoding GRX proteins in G. hirsutum. A total of 758 genes from two typical monocot and nine dicot species were naturally divided into four classes based on phylogenetic analysis. The classification was supported with organization of conserved protein motifs and sequence logos comparison between cotton, rice and Arabidopsis. Cotton GRX gene family has underwent strong purifying selection with limited functional divergence. A good collinearity was observed in the synteny analysis of four Gossypium species. Majority of cotton GRXs were influenced by various phytohormones and abiotic stress conditions during expressio...Continue Reading

References

Feb 21, 1998·Nucleic Acids Research·K HigoH Higo
Dec 10, 1998·Nucleic Acids Research·K HigoT Korenaga
Jul 13, 2000·Journal of Molecular Biology·O EmanuelssonG von Heijne
Jul 13, 2000·Cellular and Molecular Life Sciences : CMLS·J DatF Van Breusegem
Apr 16, 2002·Molecular Biology of the Cell·María Teresa Rodríguez-ManzanequeEnrique Herrero
May 16, 2002·The Journal of Heredity·R E Voorrips
Aug 15, 2002·Trends in Genetics : TIG·Laurence D Hurst
Nov 5, 2002·Nature Reviews. Genetics·Victoria E Prince, F Bryan Pickett
Sep 4, 2003·The Plant Cell·Klaas VandepoeleYves Van de Peer
Jan 10, 2004·Antioxidants & Redox Signaling·Aristi Potamitou Fernandes, Arne Holmgren
May 27, 2004·Proceedings of the National Academy of Sciences of the United States of America·A H PatersonB A Chapman
Jun 2, 2004·Cellular and Molecular Life Sciences : CMLS·N RouhierJ-P Jacquot
Jun 3, 2004·Genome Research·Gavin E CrooksSteven E Brenner
Oct 1, 2004·The Journal of Biological Chemistry·María Micaela MolinaEnrique Herrero
Mar 24, 2005·Journal of Molecular Evolution·Leif SchauserJens Stougaard
Jul 7, 2005·Antioxidants & Redox Signaling·Nicolas RouhierGunnar Wingsle
Aug 20, 2005·Nature·Rebecca A WingertUNKNOWN Tübingen 2000 Screen Consortium
Dec 6, 2005·Photosynthesis Research·Stéphane D Lemaire
May 25, 2006·Journal of Experimental Botany·Nicolas RouhierJean-Pierre Jacquot
Jun 6, 2006·Proteins·Chin-Sheng YuJenn-Kang Hwang
Jul 11, 2006·The Journal of Biological Chemistry·Ning-Hui ChengKendal D Hirschi
Aug 2, 2006·The Journal of Biological Chemistry·Mark C CarrollValeria Cizewski Culotta
Jan 20, 2007·The Plant Journal : for Cell and Molecular Biology·Lam-Son Phan TranKazuko Yamaguchi-Shinozaki
Feb 10, 2007·Annual Review of Plant Biology·Ian M MøllerAndreas Hansson
Jun 21, 2007·Functional & Integrative Genomics·Mukesh JainJitendra P Khurana
Oct 9, 2007·Nature Genetics·Miguel Angel PujanaMarc Vidal
Nov 6, 2007·Cell·Sarah P Otto
May 1, 2008·Annual Review of Plant Biology·Nicolas RouhierJean-Pierre Jacquot
Jun 20, 2008·Molecular Genetics and Genomics : MGG·Sihai YangJian-Qun Chen
Jul 16, 2008·Biochimica Et Biophysica Acta·Christopher Horst LilligArne Holmgren
Nov 19, 2008·Nature Reviews. Genetics·Gavin C Conant, Kenneth H Wolfe
May 22, 2009·Nucleic Acids Research·Timothy L BaileyWilliam S Noble
Mar 1, 2008·Plant Signaling & Behavior·Maria Helena Cruz de Carvalho
Jun 23, 2009·Genome Research·Martin KrzywinskiMarco A Marra
Jun 27, 2009·The New Phytologist·Lex E Flagel, Jonathan F Wendel
Mar 30, 2010·Journal of Molecular Biology·Ming LuoCong-Zhao Zhou
Sep 28, 2010·Plant Physiology and Biochemistry : PPB·Sarvajeet Singh Gill, Narendra Tuteja

❮ Previous
Next ❯

Citations

May 10, 2021·International Journal of Biological Macromolecules·Shouhong ZhuYongshan Zhang

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.