Genome-wide identification and expression profiling analysis of ZmPIN, ZmPILS, ZmLAX and ZmABCB auxin transporter gene families in maize (Zea mays L.) under various abiotic stresses

PloS One
Runqing YueChenJia Shen

Abstract

The auxin influx carriers auxin resistant 1/like aux 1 (AUX/LAX), efflux carriers pin-formed (PIN) (together with PIN-like proteins) and efflux/conditional P-glycoprotein (ABCB) are major protein families involved in auxin polar transport. However, how they function in responses to exogenous auxin and abiotic stresses in maize is largely unknown. In this work, the latest updated maize (Zea mays L.) reference genome sequence was used to characterize and analyze the ZmLAX, ZmPIN, ZmPILS and ZmABCB family genes from maize. The results showed that five ZmLAXs, fifteen ZmPINs, nine ZmPILSs and thirty-five ZmABCBs were mapped on all ten maize chromosomes. Highly diversified gene structures, nonconservative transmembrane helices and tissue-specific expression patterns suggested the possibility of function diversification for these genes. Quantitative real-time polymerase chain reaction (qRT-PCR) was used to analyze the expression patterns of ZmLAX, ZmPIN, ZmPILS and ZmABCB genes under exogenous auxin and different environmental stresses. The expression levels of most ZmPIN, ZmPILS, ZmLAX and ZmABCB genes were induced in shoots and were reduced in roots by various abiotic stresses (drought, salt and cold stresses). The opposite express...Continue Reading

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Citations

Mar 26, 2016·Frontiers in Plant Science·Chenglin ChaiHenry T Nguyen
May 5, 2017·International Journal of Molecular Sciences·Zhehao ChenYanjun Yang
Apr 21, 2017·Frontiers in Plant Science·Yuzhou ZhangGuanghui Xiao
Jun 19, 2019·Plant Signaling & Behavior·Zhaoxia LiJuren Zhang
Sep 14, 2017·Journal of Experimental Botany·Eun Hyang HanJoshua J Blakeslee
Dec 8, 2017·Planta·R M Saravana KumarJohan Edqvist
Mar 14, 2020·Annual Review of Plant Biology·Eva van ZelmChrista Testerink
Jul 6, 2017·International Journal of Molecular Sciences·Agnieszka BielachVanesa B Tognetti
Sep 19, 2018·International Journal of Molecular Sciences·Jing-Jing Zhou, Jie Luo
Jun 1, 2021·Plant Signaling & Behavior·Kai YueZhuzhu Luo
Sep 7, 2021·Journal of Experimental Botany·Zhe ChenQingchun Pan

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Methods Mentioned

BETA
environmental stress
environmental stresses

Software Mentioned

SyMAP Synteny Browser
InterProScan Search
GeneDoc
Treeview
BLAST
Gene Structure Display Server ( GSDS )
ClustalW

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