Genome-Wide Identification and Expression Analysis of the Biotin Carboxyl Carrier Subunits of Heteromeric Acetyl-CoA Carboxylase in Gossypium

Frontiers in Plant Science
Yupeng CuiJinping Hua

Abstract

Acetyl-CoA carboxylase is an important enzyme, which catalyzes acetyl-CoA's carboxylation to produce malonyl-CoA and to serve as a committed step for de novo fatty acid biosynthesis in plastids. In this study, 24 putative cotton BCCP genes were identified based on the lately published genome data in Gossypium. Among them, 4, 4, 8, and 8 BCCP homologs were identified in Gossypium raimondii, G. arboreum, G. hirsutum, and G. barbadense, respectively. These genes were divided into two classes based on a phylogenetic analysis. In each class, these homologs were relatively conserved in gene structure and motifs. The chromosomal distribution pattern revealed that all the BCCP genes were distributed equally on corresponding chromosomes or scaffold in the four cotton species. Segmental duplication was a predominant duplication event in both of G. hirsutum and G. barbadense. The analysis of the expression profile showed that 8 GhBCCP genes expressed in all the tested tissues with changed expression levels, and GhBCCP genes belonging to class II were predominantly expressed in developing ovules. Meanwhile, the expression analysis for the 16 cotton BCCP genes from G. raimondii, G. arboreum and G. hirsutum showed that they were induced or s...Continue Reading

References

Apr 1, 1997·Proceedings of the National Academy of Sciences of the United States of America·W SchulteN Martini
Dec 10, 1998·Nucleic Acids Research·K HigoT Korenaga
Mar 9, 1999·Plant Physiology·S ReverdattoN C Nielsen
Dec 10, 1999·Proceedings of the National Academy of Sciences of the United States of America·R C CronnJ F Wendel
Nov 10, 2000·Science·M Lynch, J S Conery
Feb 16, 2002·Methods : a Companion to Methods in Enzymology·K J Livak, T D Schmittgen
May 16, 2002·The Journal of Heredity·R E Voorrips
Sep 12, 2002·Annual Review of Plant Biology·Jian-Kang Zhu
Apr 8, 2003·Molecular Biology and Evolution·David S SenchinaJonathan F Wendel
May 29, 2003·Current Protein & Peptide Science·Sarawut Jitrapakdee, John C Wallace
Dec 12, 2003·Bioinformatics·Julio RozasRicardo Rozas
Jun 25, 2004·Bioscience, Biotechnology, and Biochemistry·Yukiko Sasaki, Yukio Nagano
Jun 28, 2005·Nucleic Acids Research·E QuevillonR Lopez
Apr 21, 2007·Nature Protocols·Olof EmanuelssonHenrik Nielsen
May 23, 2007·Nucleic Acids Research·Paul HortonKenta Nakai
Aug 19, 2007·Analytical Biochemistry·Kuo-Chen Chou, Hong-Bin Shen
Sep 12, 2007·Bioinformatics·M A LarkinD G Higgins
May 22, 2009·Nucleic Acids Research·Timothy L BaileyWilliam S Noble
Jun 27, 2009·The New Phytologist·Lex E Flagel, Jonathan F Wendel
Oct 6, 2009·Biochemical and Biophysical Research Communications·Jian-Tao ZhangHong-Xia Zhang
Mar 23, 2011·Plant Science : an International Journal of Experimental Plant Biology·Keyu GuZhongchao Yin
Aug 20, 2011·The Plant Journal : for Cell and Molecular Biology·Manuel A Troncoso-PonceJohn B Ohlrogge
Jun 21, 2012·Biotechnology Letters·Yingfei ChenPeter J Reilly
Aug 28, 2012·Nature Genetics·Kunbo WangShuxun Yu
Mar 12, 2013·Functional & Integrative Genomics·Mei-Liang ZhouYan-Min Wu
May 3, 2013·PloS One·Zhi-Yong HuHan-Zhong Wang
Jul 11, 2013·Development Genes and Evolution·Haiyang JiangSuwen Zhu
Nov 10, 2013·Nucleic Acids Research·Jing YuDorrie Main
Nov 30, 2013·Nucleic Acids Research·Robert D FinnMarco Punta
May 20, 2014·Nature Genetics·Fuguang LiShuxun Yu
Oct 11, 2014·Nucleic Acids Research·Ivica LetunicPeer Bork
Dec 17, 2014·Bioinformatics·Bo HuGe Gao

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Methods Mentioned

BETA
PCR
RNA-Seq
dissection
transgenic
salt stress

Software Mentioned

BLASTP
Clustal X
MEME
CottonGen
Interproscan
SMART
Primer
MultiExperiment Viewer ( MeV
Mapchart
Gene Structure Display Server ( GSDS )

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