Genome-wide investigation of the AP2/ERF gene family in tartary buckwheat (Fagopyum Tataricum)

BMC Plant Biology
Moyang LiuHui Chen

Abstract

AP2/ERF transcription factors perform indispensable functions in various biological processes, such as plant growth, development, biotic and abiotic stresses responses. The AP2/ERF transcription factor family has been identified in many plants, and several AP2/ERF transcription factors from Arabidopsis thaliana (A. thaliana) have been functionally characterized. However, little research has been conducted on the AP2/ERF genes of tartary buckwheat (Fagopyum tataricum), which is an important edible and medicinal crop. The recently published whole genome sequence of tartary buckwheat allowed us to study the tissue and expression profiles of AP2/ERF genes in tartary buckwheat on a genome-wide basis. In this study, 134 AP2/ERF genes of tartary buckwheat (FtAP2/ERF) were identified and renamed according to the chromosomal distribution of the FtAP2/ERF genes. According to the number conserved domains and gene structure, the AP2/ERF genes were divided into three subfamilies by phylogenetic tree analysis, namely, AP2 (15 members), ERF (116 members) and RAV (3 members). A total of 10 motifs were detected in tartary buckwheat AP2/ERF genes, and some of the unique motifs were found to be important for the function of AP2/ERF genes. A compr...Continue Reading

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Citations

Nov 26, 2019·Plant Physiology and Biochemistry : PPB·Michele Valquíria Dos ReisSchuyler S Korban

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Software Mentioned

Origin Pro
MCScanX
Geneious R11
Gene Structure Display Server
Dual Systeny Plotter
HMMER
SMART
Primer3
MEME
BLASTP

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