Genomic analysis and growth characteristic of dengue viruses from Makassar, Indonesia

Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases
R Tedjo SasmonoMark J Schreiber

Abstract

Dengue fever is currently the most important mosquito-borne viral disease in Indonesia. In South Sulawesi province, most regions report dengue cases including the capital city, Makassar. Currently, no information is available on the serotypes and genotypes of the viruses circulating in the area. To understand the dynamic of dengue disease in Makassar, we carried out dengue fever surveillance study during 2007-2010. A total of 455 patients were recruited, in which antigen and serological detection revealed the confirmed dengue cases in 43.3% of patients. Molecular detection confirmed the dengue cases in 27.7% of patients, demonstrating that dengue places a significant disease burden on the community. Serotyping revealed that dengue virus serotype 1 (DENV-1) was the most predominant serotype, followed by DENV-2, -3, and -4. To determine the molecular evolution of the viruses, we conducted whole-genome sequencing of 80 isolates. Phylogenetic analysis grouped DENV-2, -3 and -4 to the Cosmopolitan genotype, Genotype I and Genotype II, respectively. Intriguingly, each serotype paints a different picture of evolution and transmission. DENV-1 appears to be undergoing a clade replacement with Genotype IV being supplanted by Genotype I. ...Continue Reading

References

Jan 1, 1994·The Journal of General Virology·R S LanciottiD W Trent
Sep 18, 1997·The Journal of General Virology·R S LanciottiD W Trent
Dec 23, 1999·The Journal of Infectious Diseases·D W VaughnA Nisalak
Feb 9, 2000·Trends in Microbiology·E C Holmes, S S Burch
May 2, 2000·Microbiology and Immunology·B D Pandey, A Igarashi
Aug 9, 2001·Transactions of the Royal Society of Tropical Medicine and Hygiene·A L CorwinK R Porter
Aug 29, 2001·Bioinformatics·J P Huelsenbeck, F Ronquist
Dec 17, 2002·Virology·Ana P GoncalvezFerdinando Liprandi
Jan 10, 2003·Molecular Biology and Evolution·S Susanna TwiddyAndrew Rambaut
Jun 12, 2003·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Edward C Holmes, S Susanna Twiddy
Aug 2, 2003·Emerging Infectious Diseases·Pallavi GargO Colin Stine
Mar 23, 2004·Nucleic Acids Research·Robert C Edgar
Mar 2, 2006·Transactions of the Royal Society of Tropical Medicine and Hygiene·Agus SuwandonoPatrick J Blair
Nov 13, 2007·BMC Evolutionary Biology·Alexei J Drummond, Andrew Rambaut
Feb 5, 2008·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Swee Hoe OngMark J Schreiber
Feb 13, 2009·Journal of Virology·Mark J SchreiberMartin L Hibberd
Apr 28, 2010·Bioinformatics·Jeet Sukumaran, Mark T Holder
Aug 17, 2010·Bioinformatics·Robert C Edgar
Nov 17, 2010·Nature Reviews. Microbiology·Maria G GuzmanRosanna W Peeling
Feb 5, 2011·The American Journal of Tropical Medicine and Hygiene·Richard G JarmanRobert V Gibbons

❮ Previous
Next ❯

Citations

Nov 11, 2015·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Tomohiro KotakiEiji Konishi
Jul 15, 2015·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Sneha SinghEaswaran Sreekumar
May 25, 2016·Pathogens and Global Health·Sotianingsih HaryantoR Tedjo Sasmono
Sep 22, 2016·Protein Expression and Purification·Benediktus YohanR Tedjo Sasmono
May 23, 2017·PLoS Neglected Tropical Diseases·Dewi MegawatiR Tedjo Sasmono
Jun 3, 2017·PloS One·Puspa WardhaniR Tedjo Sasmono
Mar 4, 2017·Journal of Virological Methods·Syed Fazil AhamedAnita Shet
Mar 2, 2018·PLoS Neglected Tropical Diseases·Dagwin Luang-SuarkiaAllison Imrie
Jun 29, 2018·PLoS Neglected Tropical Diseases·R Tedjo SasmonoJoshua Nealon
Aug 17, 2018·Journal of Travel Medicine·Sri MasyeniR Tedjo Sasmono
May 19, 2019·International Journal of Environmental Research and Public Health·Ayu RahayuEggi Arguni
Oct 22, 2019·PLoS Neglected Tropical Diseases·I Made Susila UtamaKetut Tuti Merati Parwati
Jul 3, 2020·Japanese Journal of Infectious Diseases·Beti Ernawati DewiFithriyah Sjatha
Jun 6, 2018·Frontiers in Cellular and Infection Microbiology·Songjiao WenQiangming Sun
Jun 11, 2017·Virus Genes·C S Whinie LestariR Tedjo Sasmono
May 1, 2017·Asian Pacific Journal of Tropical Biomedicine·I Made Artika, Chairin Nisa Ma'roef
Aug 6, 2020·Viruses·Harapan HarapanAllison Imrie
Mar 16, 2019·BMC Research Notes·Sri MasyeniR Tedjo Sasmono
Jun 1, 2018·Journal of Tropical Medicine·Muh TaslimAndi Nilawati Usman
Jan 8, 2021·Transactions of the Royal Society of Tropical Medicine and Hygiene·Tsheten TshetenKinley Wangdi
Feb 13, 2021·Archives of Virology·Eun-Ha HwangBon-Sang Koo
Feb 2, 2020·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·I Made ArtikaChairin Nisa Ma'roef
Jul 1, 2021·Scientific Reports·Surya Pavan YenamandraHapuarachchige Chanditha Hapuarachchi
Jul 4, 2021·Talanta·Bassam Bachour JuniorMarcelo Mulato
Aug 20, 2021·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·R Tedjo SasmonoDionisius Denis
Jun 26, 2021·Canadian Journal of Microbiology·Sudipta Kumar Roy, Soumen Bhattacharjee
Sep 17, 2021·Transactions of the Royal Society of Tropical Medicine and Hygiene·Rahma F HayatiR Tedjo Sasmono
Oct 26, 2021·Food and Environmental Virology·Bibhudutta Mishra, Raviprasad Aduri

❮ Previous
Next ❯

Related Concepts