Genomic characterization and phylogenetic analysis of SARS-COV-2 in Italy

Journal of Medical Virology
Gianguglielmo ZehenderMassimo Galli

Abstract

This report describes the isolation, molecular characterization, and phylogenetic analysis of the first three complete genomes of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) isolated from three patients involved in the first outbreak of COVID-19 in Lombardy, Italy. Early molecular epidemiological tracing suggests that SARS-CoV-2 was present in Italy weeks before the first reported cases of infection.

References

Apr 10, 2008·Molecular Biology and Evolution·David Posada
Mar 1, 2012·Molecular Biology and Evolution·Alexei J DrummondAndrew Rambaut
Feb 1, 2020·The New England Journal of Medicine·Camilla RotheMichael Hoelscher
Feb 1, 2020·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·D ParaskevisS Tsiodras
Feb 26, 2020·Journal of Medical Virology·Alessia LaiGianguglielmo Zehender
Apr 15, 2020·Nature Medicine·Kristian G AndersenRobert F Garry

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Citations

May 16, 2020·JMIR Public Health and Surveillance·Carla MavianMarco Salemi
Jun 4, 2020·Journal of Medical Virology·Domenico BenvenutoAntonio Cassone
Jul 3, 2020·The British Journal of Dermatology·L RizzoliR Balestri
Jul 30, 2020·Viruses·Alessia LaiGianguglielmo Zehender
Sep 12, 2020·Epidemiology and Infection·S Petti, B J Cowling
Aug 21, 2020·Journal of Medical Virology·Valeria MicheliMaria R Gismondo
Sep 10, 2020·Journal of Medical Virology·Silvio De Flora, Sebastiano La Maestra
Jun 13, 2020·Nature Medicine·Allison BlackTrevor Bedford
Jul 10, 2020·Euro Surveillance : Bulletin Européen Sur Les Maladies Transmissibles = European Communicable Disease Bulletin·Fabiana GámbaroEtienne Simon-Loriere
Apr 22, 2020·Journal of Medical Virology·Sebastiano La MaestraSilvio De Flora
Jul 17, 2020·Nature Microbiology·Andrew RambautOliver G Pybus
Aug 18, 2020·American Journal of Medical Genetics. Part a·Angela PeronMaria Paola Canevini
Aug 25, 2020·SN Comprehensive Clinical Medicine·Daniele SchenaLuca Galassi
Jul 16, 2020·Clinics·André Oliveira PaggiaroRolf Gemperli
Oct 10, 2020·Cell and Tissue Banking·André Oliveira PaggiaroRolf Gemperli
Oct 14, 2020·Scientific Reports·Alessandro SpeltaFabio Pammolli
Nov 19, 2020·PLoS Genetics·Yatish TurakhiaRussell Corbett-Detig
Oct 21, 2020·The American Journal of Tropical Medicine and Hygiene·Costanza VicentiniCarla Maria Zotti
Dec 7, 2020·Briefings in Bioinformatics·Matteo ChiaraGraziano Pesole
Dec 10, 2020·Emerging Infectious Diseases·Antonella AmendolaElisabetta Tanzi
Aug 25, 2020·The Science of the Total Environment·Giuseppina La RosaElisabetta Suffredini
Feb 11, 2021·Internal and Emergency Medicine·Anna M PietroboniUNKNOWN Neurology-COVID-19 Group
May 22, 2020·Journal of Medical Virology·Marco TartaglioneGiovanni Gordini
Dec 18, 2020·Viruses·Francesca Di GiallonardoAlessio Lorusso
Jan 12, 2021·SN Comprehensive Clinical Medicine·Luca Galassi, Daniele Schena
Feb 12, 2021·Proceedings of the National Academy of Sciences of the United States of America·Sarah A NadeauTanja Stadler
Dec 17, 2020·International Journal of Environmental Research and Public Health·Maria de Lourdes Aguiar-OliveiraMarilda M Siqueira
Oct 31, 2020·Human Vaccines & Immunotherapeutics·Lifeng LiHuiqing Sun
Feb 9, 2021·The World Allergy Organization Journal·Alessandro Fiocchi, Erika Jensen-Jarolim
Feb 20, 2021·Molecular Biology and Evolution·Matteo ChiaraGraziano Pesole
Mar 22, 2021·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Roger FrutosChristian A Devaux
Mar 23, 2021·Global Medical Genetics·Amir KhodavirdipourMohammad Khalaj-Kondori
May 1, 2021·Viruses·Leonardo RestaRoberta Rossi
Apr 29, 2021·Indian Journal of Otolaryngology and Head and Neck Surgery : Official Publication of the Association of Otolaryngologists of India·Prem SagarAlok Thakar
Jul 2, 2021·Italian Journal of Pediatrics·Gregorio P MilaniGiorgio Costantino
Aug 7, 2021·Scientific Reports·Piyush MathurPankaj Yadav
Aug 20, 2021·PloS One·Aleš TichopádVratislav Sedlák

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Software Mentioned

BEAST
JmodelTest
Geneious
TempEst

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