Genomic fingerprinting of Burkholderia pseudomallei and B. mallei pathogens with DNA array based on interspecies sequence differences obtained by subtractive hybridization

Research in Microbiology
Alexey FushanEugene Sverdlov

Abstract

The ability to rapidly and efficiently identify causative agents of dangerous human and animal diseases is a prerequisite to diagnosis, prophylaxis and therapy. Such identification systems can be developed based on DNA markers enabling differentiation between various bacterial strains. One source of these markers is genetic polymorphism. An efficient method for detecting the most stable polymorphisms without knowledge of genomic sequences is subtractive hybridization. In this work we report an approach to typing of Burkholderia pseudomallei and B. mallei that cause melioidosis and glanders, respectively. Typing is based on hybridization of bacterial genomes with a DNA array of genomic markers obtained using subtractive hybridization. The array comprised 55 DNA fragments which distinguished the genomes of B. pseudomallei C-141 and B. mallei C-5 strains, and it was used to test 28 radioactively labeled B. pseudomallei strains and 8 B. mallei strains. Each strain was characterized by a specific hybridization pattern, and the results were analyzed using cluster analysis. 18 patterns specific to B. pseudomallei and 6 patterns specific to B. mallei were found to be unique. The data allowed us to differentiate most studied B. pseudoma...Continue Reading

References

Jan 20, 1967·Science·W M Fitch, E Margoliash
Oct 1, 1996·Proceedings of the National Academy of Sciences of the United States of America·C R Tinsley, X Nassif
Apr 18, 2000·Journal of Clinical Pathology·T L Pitt, N A Saunders
May 15, 2002·Microbiology and Immunology·Narisara Anuntagool, Stitaya Sirisinha
Feb 12, 2004·Bioinformatics·M J L de HoonS Miyano
Mar 31, 2004·Molecular and Cellular Probes·Suda TanpiboonsakSumalee Tungpradabkul
Jun 8, 2004·Bioinformatics·Alok J Saldanha
Sep 21, 2004·Proceedings of the National Academy of Sciences of the United States of America·William C NiermanClaire M Fraser
Sep 21, 2004·Proceedings of the National Academy of Sciences of the United States of America·Matthew T G HoldenJulian Parkhill

❮ Previous
Next ❯

Citations


❮ Previous
Next ❯

Related Concepts