Genomic position mapping discrepancies of commercial SNP chips.

PloS One
João Fadista, Christian Bendixen

Abstract

The field of genetics has come to rely heavily on commercial genotyping arrays and accompanying annotations for insights into genotype-phenotype associations. However, in order to avoid errors and false leads, it is imperative that the annotation of SNP chromosomal positions is accurate and unambiguous. We report on genomic positional discrepancies of various SNP chips for human, cattle and mouse species, and discuss their causes and consequences.

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Citations

Feb 15, 2013·Genetics, Selection, Evolution : GSE·Hubert PauschRuedi Fries
Dec 18, 2014·Animal Genetics·Gábor MészárosJohann Sölkner
Jun 26, 2013·BMB Reports·Woncheoul ParkHeebal Kim
Jun 27, 2015·BMC Medical Genomics·Akram AlyassDavid Meyre
Feb 26, 2014·BMC Bioinformatics·Andrea ManconiLuciano Milanesi

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Methods Mentioned

BETA
genotyping
chips
chip

Software Mentioned

BLAST
Unix
[UNK]
R
MEGABLAST

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