genoPlotR: comparative gene and genome visualization in R.

Bioinformatics
Lionel GuySiv G E Andersson

Abstract

The amount of gene and genome data obtained by next-generation sequencing technologies generates a need for comparative visualization tools. Complementing existing software for comparison and exploration of genomics data, genoPlotR automatically creates publication-grade linear maps of gene and genomes, in a highly automatic, flexible and reproducible way. genoPlotR is a platform-independent R package, available with full source code under a GPL2 license at R-Forge: http://genoplotr.r-forge.r-project.org/.

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Citations

Jan 22, 2013·Plasmid·Anne BleicherHans Peter Saluz
Feb 1, 2011·Bioinformatics·Mitchell J SullivanScott A Beatson
Feb 8, 2011·Bioinformatics·Brent S PedersenMichael Freeling
Nov 20, 2012·Genome Biology and Evolution·David WilliamsR Thane Papke
Jan 29, 2013·Genome Biology and Evolution·Rafael Patiño-NavarreteJuli Peretó
May 15, 2012·BMC Evolutionary Biology·Lionel GuySiv G E Andersson
Jun 14, 2013·BMC Genetics·Hannele Lindqvist-KreuzeMerideth Bonierbale
Apr 18, 2013·PLoS Genetics·Kirsten Maren EllegaardSiv G E Andersson
Mar 3, 2012·PloS One·Christiaan V HenkelGuido E E J M van den Thillart
Oct 19, 2012·PloS One·Alejandro Manzano-MarínAmparo Latorre
Aug 11, 2011·PLoS Pathogens·Joshua Chang MellRosemary J Redfield
Apr 17, 2014·BMC Genomics·Haeyoung JeongWon-Joong Jeong
May 24, 2014·Nature Communications·Richard G EverittDaniel J Wilson
Sep 7, 2014·Genome Biology and Evolution·Milind B RatnaparkheAndrew H Paterson
Dec 30, 2014·FEBS Letters·Michael J MansfieldAndrew C Doxey
Jan 26, 2016·Marine Drugs·Michael PreisitschSabine Mundt
Feb 24, 2016·Frontiers in Plant Science·Hugues De GernierChristian Hermans
Jan 23, 2016·Chromosome Research : an International Journal on the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology·Jan Janečka, Martin A Lysak
Sep 24, 2014·Genome Biology·Xiaofang JiangZhijian Tu
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Oct 7, 2015·Frontiers in Microbiology·Mária DžunkováAndrés Moya
May 7, 2016·Bioinformatics·Karen Y Oróstica, Ricardo A Verdugo
Apr 25, 2015·Environmental Microbiology·Frederik SchulzMatthias Horn
Jan 30, 2015·Environmental Microbiology·Julien LossouarnClaire Geslin
May 9, 2015·Bioinformatics·Adrian Baez-OrtegaCarlos Flores
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Mar 31, 2015·Computational Biology and Chemistry·Sergey AganezovMax A Alekseyev

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Software Mentioned

phylog
R
R Development Core
Artemis Comparison Tool ( ACT
ade4
BLAST
genoPlotR
Genbank
Mauve
R package

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