GIVE: portable genome browsers for personal websites

Genome Biology
Xiaoyi CaoSheng Zhong

Abstract

Growing popularity and diversity of genomic data demand portable and versatile genome browsers. Here, we present an open source programming library called GIVE that facilitates the creation of personalized genome browsers without requiring a system administrator. By inserting HTML tags, one can add to a personal webpage interactive visualization of multiple types of genomics data, including genome annotation, "linear" quantitative data, and genome interaction data. GIVE includes a graphical interface called HUG (HTML Universal Generator) that automatically generates HTML code for displaying user chosen data, which can be copy-pasted into user's personal website or saved and shared with collaborators. GIVE is available at: https://www.givengine.org/ .

References

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Citations

May 23, 2019·Nucleic Acids Research·Jia LuSheng Zhong
Oct 18, 2019·Nature Protocols·Weixin WuSheng Zhong
Nov 27, 2019·Computer Graphics Forum : Journal of the European Association for Computer Graphics·S NusratN Gehlenborg
Jul 19, 2018·Genome Biology·Aziz Khan, Xuegong Zhang
Feb 6, 2019·Proceedings of the National Academy of Sciences of the United States of America·Zhangming YanSheng Zhong
Apr 30, 2020·Genome Biology·Shun LiuMengjie Chen

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Methods Mentioned

BETA
immunoprecipitation
Assay
Hi-C

Software Mentioned

Apache
MySQL
MARGI
AWS
macOS
GIVE HUG ( TML U G enerator
Google map
Windows
- toolbox
Azure

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