Global gene expression profile of cerebral ischemia-reperfusion injury in rat MCAO model

Oncotarget
Chunmei WangJing Chen

Abstract

It is well-established that reperfusion following cerebral ischemic injury gives rise to secondary injury accompanied by structural and functional damage. However, it remains unclear how global genes changes in cerebral ischemia-reperfusion injury (IRI). This study investigated global gene expression in the hippocampi of Wistar rats following transient cerebral IRI using an RNA-sequencing strategy. The results revealed ≥2-fold up-regulation of 156 genes and ≥2-fold down-regulation of 26 genes at 24 h post-reperfusion. Fifteen differentially expressed genes were selected to confirm the RNA-sequencing results. Gene expression levels were dynamic, with the peak expression level of each gene occurring at different time points post-reperfusion. Gene Ontology (GO) analysis classified the differentially expressed genes as mainly involved in inflammation, stress and immune response, glucose metabolism, proapoptosis, antiapoptosis, and biological processes. KEGG pathway analysis suggested that IRI activated different signaling pathways, including focal adhesion, regulation of actin cytoskeleton, cytokine-cytokine receptor interaction, MAPK signaling, and Jak-STAT signaling. This study describes global gene expression profiles in the hip...Continue Reading

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Citations

Jul 9, 2020·Medicinal Research Reviews·Lyudmila V DergunovaNikolai F Myasoedov
Jun 23, 2020·Biochemistry. Biokhimii︠a︡·I B FilippenkovN F Myasoedov

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Methods Mentioned

BETA
ELISA
electrophoresis
PCR
enzyme-linked immunosorbent assay

Software Mentioned

SAM
ImageJ2x
WEGO
Pro Plus
Treeview
Image
GraphPad Prism

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