DOI: 10.1101/494104Dec 13, 2018Paper

GTShark: Genotype compression in large project

BioRxiv : the Preprint Server for Biology
Sebastian Deorowicz, Agnieszka Danek

Abstract

Summary: Nowadays large sequencing projects handle tens of thousands of individuals. The huge files summarizing the findings definitely require compression. We propose a tool able to compress large collections of genotypes as well as single samples in such projects to sizes not achievable to date. Availability and Implementation: https://github.com/refresh-bio/GTShark Contact: sebastian.deorowicz@polsl.pl Supplementary information: Supplementary data are available at publisher's Web site.

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