Harmonization strategies for multicenter radiomics investigations.

Physics in Medicine and Biology
R Da-AnoM Hatt

Abstract

Carrying out large multicenter studies is one of the key goals to be achieved towards a faster transfer of the radiomics approach in the clinical setting. This requires large-scale radiomics data analysis, hence the need for integrating radiomic features extracted from images acquired in different centers. This is challenging as radiomic features exhibit variable sensitivity to differences in scanner model, acquisition protocols and reconstruction settings, which is similar to the so-called 'batch-effects' in genomics studies. In this review we discuss existing methods to perform data integration with the aid of reducing the unwanted variation associated with batch effects. We also discuss the future potential role of deep learning methods in providing solutions for addressing radiomic multicentre studies.

References

Dec 25, 2003·Bioinformatics·Monica BenitoJ S Marron
Apr 25, 2006·Biostatistics·W Evan JohnsonAriel Rabinovic
Oct 3, 2007·PLoS Genetics·Jeffrey T Leek, John D Storey
Mar 8, 2008·Bioinformatics·Andrey A ShabalinAndrew B Nobel
Jun 1, 2007·Cancer Research and Treatment : Official Journal of Korean Cancer Association·Ki-Yeol KimSun Young Rha
Jan 26, 2010·Biostatistics·Matthew N McCallRafael A Irizarry
Sep 15, 2010·Nature Reviews. Genetics·Jeffrey T LeekRafael A Irizarry
Feb 16, 2011·Journal of Nuclear Medicine : Official Publication, Society of Nuclear Medicine·Florent TixierDimitris Visvikis
Sep 20, 2011·BMC Bioinformatics·Matthew N McCall, Rafael A Irizarry
Nov 22, 2011·Biostatistics·Johann A Gagnon-Bartsch, Terence P Speed
Jan 20, 2012·European Journal of Cancer : Official Journal for European Organization for Research and Treatment of Cancer (EORTC) [and] European Association for Cancer Research (EACR)·Philippe LambinHugo J W L Aerts
Mar 29, 2012·Journal of Nuclear Medicine : Official Publication, Society of Nuclear Medicine·Florent TixierDimitris Visvikis
Aug 2, 2012·Briefings in Bioinformatics·Cosmin LazarAnn Nowé
Aug 18, 2012·Magnetic Resonance Imaging·Virendra KumarRobert J Gillies
Dec 4, 2012·Journal of Nuclear Medicine : Official Publication, Society of Nuclear Medicine·Gary J R CookDavid Landau
Jul 17, 2013·European Journal of Nuclear Medicine and Molecular Imaging·Mathieu HattDimitris Visvikis
Apr 29, 2014·Translational Oncology·Yoganand BalagurunathanRobert J Gillies
Jun 4, 2014·Nature Communications·Hugo J W L AertsPhilippe Lambin
Dec 3, 2014·European Journal of Nuclear Medicine and Molecular Imaging·Ronald BoellaardUNKNOWN European Association of Nuclear Medicine (EANM)
Dec 17, 2014·Journal of Nuclear Medicine : Official Publication, Society of Nuclear Medicine·Mathieu HattDimitris Visvikis
Jun 27, 2015·Investigative Radiology·Dennis MackinLaurence Court
Aug 1, 2015·Journal of Nuclear Medicine : Official Publication, Society of Nuclear Medicine·Jianhua YanDavid Townsend
Nov 19, 2015·Proceedings of the National Academy of Sciences of the United States of America·Duc FehrJoseph O Deasy
Nov 19, 2015·Radiology·Robert J GilliesHedvig Hricak
Feb 28, 2016·Molecular Imaging and Biology : MIB : the Official Publication of the Academy of Molecular Imaging·Floris H P van VeldenRonald Boellaard
Jun 9, 2016·Physics in Medicine and Biology·Stephen S F Yip, Hugo J W L Aerts
Jun 9, 2016·European Journal of Nuclear Medicine and Molecular Imaging·Mathieu HattDimitris Visvikis
Nov 5, 2016·European Journal of Nuclear Medicine and Molecular Imaging·Charline LasnonNicolas Aide
Nov 3, 2016·Nature Reviews. Clinical Oncology·James P B O'ConnorJohn C Waterton
Dec 13, 2016·The British Journal of Radiology·Ruben T H M LarueWouter van Elmpt
Dec 29, 2016·Radiotherapy and Oncology : Journal of the European Society for Therapeutic Radiology and Oncology·Arthur JochemsAndre Dekker
Jan 24, 2017·Medical Physics·Muhammad Shafiq-Ul-HassanEduardo Gerardo Moros
Mar 30, 2017·Trends in Biotechnology·Wilson Wen Bin GohLimsoon Wong
Jun 18, 2017·European Journal of Nuclear Medicine and Molecular Imaging·Nicolas AideRonald Boellaard
Aug 23, 2017·NeuroImage·Jean-Philippe FortinRussell T Shinohara

❮ Previous
Next ❯

Citations

Jan 30, 2021·Seminars in Nuclear Medicine·Mathieu HattDimitris Visvikis
Nov 17, 2020·Methods : a Companion to Methods in Enzymology·Olena TankyevychCatherine Cheze Le Rest
Mar 12, 2021·European Journal of Nuclear Medicine and Molecular Imaging·Guangyao WuPhilippe Lambin
Mar 26, 2021·Physica Medica : PM : an International Journal Devoted to the Applications of Physics to Medicine and Biology : Official Journal of the Italian Association of Biomedical Physics (AIFB)·Panagiotis PapadimitroulasMathieu Hatt
Jul 27, 2021·Medicinal Research Reviews·Julien GuiotRalph T H Leijenaar
Jul 3, 2021·La Radiologia medica·Camilla ScapicchioEmanuele Neri

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.

Related Papers

Physics in Medicine and Biology
Stephen S F Yip, Hugo J W L Aerts
The Quarterly Journal of Nuclear Medicine and Molecular Imaging : Official Publication of the Italian Association of Nuclear Medicine (AIMN) [and] the International Association of Radiopharmacology (IAR), [and] Section of the Society of Radiopharmaceutica
Marta BogowiczStephanie Tanadini-Lang
Physica Medica : PM : an International Journal Devoted to the Applications of Physics to Medicine and Biology : Official Journal of the Italian Association of Biomedical Physics (AIFB)
Michele AvanzoIssam El Naqa
© 2021 Meta ULC. All rights reserved