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Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

BMC Genomics

Nov 19, 2015

Shuhua FuSing-Hoi Sze

Abstract

The advance of high-throughput sequencing has made it possible to obtain new transcriptomes and study splicing mechanisms in non-model organisms. In these studies, there is often a need to investigate the transcriptomes of two related organisms at the same time in order to find the simi...read more

Mentioned in this Paper

Study
Heuristics
Sequence Determinations, RNA
Computer Graphics
Sequencing
Nuclear mRNA Cis Splicing, via Spliceosome
Organism
RNA Splicing
Structure
High-Throughput Nucleotide Sequencing
3
11
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Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

BMC Genomics

Nov 19, 2015

Shuhua FuSing-Hoi Sze

PMID: 26576690

DOI: 10.1186/1471-2164-16-s11-s5

Abstract

The advance of high-throughput sequencing has made it possible to obtain new transcriptomes and study splicing mechanisms in non-model organisms. In these studies, there is often a need to investigate the transcriptomes of two related organisms at the same time in order to find the simi...read more

Mentioned in this Paper

Study
Heuristics
Sequence Determinations, RNA
Computer Graphics
Sequencing
Nuclear mRNA Cis Splicing, via Spliceosome
Organism
RNA Splicing
Structure
High-Throughput Nucleotide Sequencing
3
11

Similar Papers Found In These Feeds

Structural Biology: Biophysics

Structural Biology: Biophysics describes the study of structural biology using various biophysical techiniques such as imaging, computational modeling, etc. Discover the latest research on structrual biology here.

RNA Splicing (Keystone)

The majority of human genes that encode proteins undergo alternative pre-mRNA splicing and mutations that affect splicing are more prevalent than previously thought. Discover the latest research on RNA splicing and co-transcriptional splicing in this feed.

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