DOI: 10.1101/473553Nov 20, 2018Paper

Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum

BioRxiv : the Preprint Server for Biology
Olga DudchenkoParwinder Kaur

Abstract

We present a chromosome-length assembly of the genome of subterranean clover, Trifolium subterraneum, a key Australian pasture legume. Specifically, in situ Hi-C data (48X) was used to correct misjoins and anchor, order, and orient scaffolds in a previously published genome assembly (TSUd_r1.1; scaffold N50: 287kb). This resulted in an improved genome assembly (TrSub3; scaffold N50: 56Mb) containing eight chromosome-length scaffolds that span 95% of the sequenced bases in the input assembly.

Related Concepts

Chromosomes
Genome
Australian
In Situ
Molecular Assembly/Self Assembly
His-His-His-His-His-His
Clover (Shape)
CDCA7L gene

Related Feeds

BioRxiv & MedRxiv Preprints

BioRxiv and MedRxiv are the preprint servers for biology and health sciences respectively, operated by Cold Spring Harbor Laboratory. Here are the latest preprint articles (which are not peer-reviewed) from BioRxiv and MedRxiv.