Jun 19, 2015

Hi-Cpipe: a pipeline for high-throughput chromosome capture

BioRxiv : the Preprint Server for Biology
Giancarlo CastellanoGuglielmo Roma

Abstract

Hi-Cpipe is a bioinformatics pipeline for the automated analysis of data generated by high-throughput chromatin conformation capture (HiC). The analysis workflow comprises steps of data formatting, genome alignment, quality control and filtering, identification of genome-wide chromatin interactions, visualization and statistics. An interactive browser enables visual inspection of interaction data and results.

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Mentioned in this Paper

Genome
High Throughput Screening
Bio-Informatics
High Throughput Analysis
Chromosomes
His-His-His-His-His-His
Chromatin Location
Analysis
Chromatin
Sequence Alignment

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