journal cover

High-throughput microbial population genomics using the Cortex variation assembler

Bioinformatics

Nov 23, 2012

Zamin IqbalGil McVean

Abstract

We have developed a software package, Cortex, designed for the analysis of genetic variation by de novo assembly of multiple samples. This allows direct comparison of samples without using a reference genome as intermediate and incorporates discovery and genotyping of single-nucleotide ...read more

Mentioned in this Paper

Cortex Bone Disorders
Adrenal Cortex Diseases
Bio-Informatics
Metagenomics
Computer Programs and Programming
Genomics
Nucleotides
Microbial
Cortex of Organ
Cerebral Cortex
28
196
Paper Details
References
  • References7
  • Citations19
1
  • References7
  • Citations19
12

Similar Papers Found In These Feeds

The Nuffield Department of Medicine

Find the latest research from the Nuffield Department of Medicine at the University of Oxford here.

Metabolic Networks & Microbiomes

This feed focuses on proteomics, transcriptomics, and metabolomics in the human microbiota, as well as on metabolic pathways and reactions that underlie physiological and biochemical properties of the cell. Here is the latest research on metabolic networks in the microbiome.

Environmental Genomics

Environmental genomics deals with large-scale sequence-based information obtained from environmental samples to link organismal capabilities, organism–environment interactions, functional diversity, ecosystem processes, evolution and Earth history. Discover the latest research on Environmental Genomics here.

European Bioinformatics Institute

European Bioinformatics Institute focuses both on data resource development and investigator-driven research in the field of bioinformatics. Follow this feed to stay up to date on research by this institute.

Related Papers

Methods in Molecular Biology

Whole genome sequencing

Methods in Molecular BiologyMarch 20, 2010
Pauline C Ng, Ewen F Kirkness
© 2020 Meta ULC. All rights reserved

High-throughput microbial population genomics using the Cortex variation assembler

Bioinformatics

Nov 23, 2012

Zamin IqbalGil McVean

PMID: 23172865

DOI: 10.1093/bioinformatics/bts673

Abstract

We have developed a software package, Cortex, designed for the analysis of genetic variation by de novo assembly of multiple samples. This allows direct comparison of samples without using a reference genome as intermediate and incorporates discovery and genotyping of single-nucleotide ...read more

Mentioned in this Paper

Cortex Bone Disorders
Adrenal Cortex Diseases
Bio-Informatics
Metagenomics
Computer Programs and Programming
Genomics
Nucleotides
Microbial
Cortex of Organ
Cerebral Cortex
28
196

Similar Papers Found In These Feeds

The Nuffield Department of Medicine

Find the latest research from the Nuffield Department of Medicine at the University of Oxford here.

Metabolic Networks & Microbiomes

This feed focuses on proteomics, transcriptomics, and metabolomics in the human microbiota, as well as on metabolic pathways and reactions that underlie physiological and biochemical properties of the cell. Here is the latest research on metabolic networks in the microbiome.

Related Papers

Methods in Molecular Biology

Whole genome sequencing

Methods in Molecular BiologyMarch 20, 2010
Pauline C Ng, Ewen F Kirkness
Paper Details
References
  • References7
  • Citations19
1
  • References7
  • Citations19
12
/papers/high-throughput-microbial-population-genomics/23172865