Holistic and component plant phenotyping using temporal image sequence

Plant Methods
Sruti Das ChoudhuryTala Awada

Abstract

Image-based plant phenotyping facilitates the extraction of traits noninvasively by analyzing large number of plants in a relatively short period of time. It has the potential to compute advanced phenotypes by considering the whole plant as a single object (holistic phenotypes) or as individual components, i.e., leaves and the stem (component phenotypes), to investigate the biophysical characteristics of the plants. The emergence timing, total number of leaves present at any point of time and the growth of individual leaves during vegetative stage life cycle of the maize plants are significant phenotypic expressions that best contribute to assess the plant vigor. However, image-based automated solution to this novel problem is yet to be explored. A set of new holistic and component phenotypes are introduced in this paper. To compute the component phenotypes, it is essential to detect the individual leaves and the stem. Thus, the paper introduces a novel method to reliably detect the leaves and the stem of the maize plants by analyzing 2-dimensional visible light image sequences captured from the side using a graph based approach. The total number of leaves are counted and the length of each leaf is measured for all images in th...Continue Reading

References

Jan 17, 2007·IEEE Transactions on Pattern Analysis and Machine Intelligence·Xiang BaiWen-Yu Liu
Jul 14, 2007·IEEE Transactions on Pattern Analysis and Machine Intelligence·M Sabry Hassouna, A A Farag
Jul 24, 2008·BMC Plant Biology·Max BylesjöNathaniel R Street
Sep 4, 2012·Plant Physiology·Jonas De VylderDominique Van Der Straeten
Jun 15, 2013·Plant Physiology·Michael P PoundTony Pridmore
Aug 31, 2013·BMC Plant Biology·Faroq A L-TamHamid Reza Shahbazkia
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Mar 4, 2015·Current Opinion in Plant Biology·Noah FahlgrenIvan Baxter
Aug 17, 2016·Plant Physiology·Ryan F McCormickJohn E Mullet

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Citations

May 10, 2019·Frontiers in Plant Science·Sruti Das ChoudhuryTala Awada
Jun 11, 2020·Plant Methods·Di WuHuawei Qin
Oct 2, 2020·Applications in Plant Sciences·Sunil K Kenchanmane RajuJames C Schnable
Nov 27, 2020·Bioinformatics·Paula A Marin ZapataDjork-Arné Clevert
Dec 29, 2020·Frontiers in Plant Science·Sruti Das ChoudhuryTala Awada
Feb 2, 2021·Frontiers in Bioengineering and Biotechnology·Daoliang LiAkhter Muhammad
Dec 15, 2020·Plant Phenomics : a Science Partner Journal·Chenyong MiaoJames C Schnable
Jul 6, 2021·Frontiers in Plant Science·Emily Thoday-KennedySurya Kant
Aug 13, 2021·Plant Phenomics : a Science Partner Journal·Augusto Souza, Yang Yang
Aug 19, 2021·Plant Phenomics : a Science Partner Journal·Xingche GuoPatrick S Schnable

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Methods Mentioned

BETA
environmental stresses

Software Mentioned

UNL
CPPD
OpenCV
ImageJ
GPL2
NET
VisualSFM
GNU
LemnaTec Scanalyzer
LEAF GUI

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