How Target-Sequence Enrichment and Sequencing (TEnSeq) Pipelines Have Catalyzed Resistance Gene Cloning in the Wheat-Rust Pathosystem

Frontiers in Plant Science
Jianping ZhangEvans S. Lagudah

Abstract

The wheat-rust pathosystem has been well-studied among host-pathogen interactions since last century due to its economic importance. Intensified efforts toward cloning of wheat rust resistance genes commenced in the late 1990s with the first successful isolation published in 2003. Currently, a total of 24 genes have been cloned from wheat that provides resistance to stem rust, leaf rust, and stripe rust. Among them, more than half (15) were cloned over the last 4 years. This rapid cloning of resistance genes from wheat can be largely credited to the development of approaches for reducing the genome complexity as 10 out of the 15 genes cloned recently were achieved by approaches that are summarized as TEnSeq (Target-sequence Enrichment and Sequencing) pipelines in this review. The growing repertoire of cloned rust resistance genes provides new tools to support deployment strategies aimed at achieving durable resistance. This will be supported by the identification of genetic variation in corresponding Avr genes from rust pathogens, which has recently begun. Although developed with wheat resistance genes as the primary targets, TEnSeq approaches are also applicable to other classes of genes as well as for other crops with complex...Continue Reading

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Citations

Oct 6, 2020·Frontiers in Plant Science·Prashanth BabuAnupam Singh
Jun 9, 2021·Nature Communications·Jianping ZhangEvans S Lagudah
Jun 8, 2021·Molecular Plant-microbe Interactions : MPMI·Valentyna KlymiukCurtis J Pozniak

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Methods Mentioned

BETA
Seq
proximity ligation
transgenic

Software Mentioned

MutRenSeq
RenSeq
TEnSeq
MutRenSeq pipeline
Target Enrichment and Sequencing TEnSeq
MutChromSeq
TACCA
TEnSeq En richment and Seq uencing
AgRenSeq

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