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HTSeq--a Python framework to work with high-throughput sequencing data

Bioinformatics

Sep 28, 2014

Simon AndersWolfgang Huber

Abstract

A large choice of tools exists for many standard tasks in the analysis of high-throughput sequencing (HTS) data. However, once a project deviates from standard workflows, custom scripts are needed. We present HTSeq, a Python library to facilitate the rapid development of such scripts. H...read more

Mentioned in this Paper

Genome
Computer Programs and Programming
Genomics
Sequencing
High-Throughput Nucleotide Sequencing
Genome, Human
48
2
4204
3
Paper Details
References
  • References7
  • Citations2258
1
  • References7
  • Citations2258
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HTSeq--a Python framework to work with high-throughput sequencing data

Bioinformatics

Sep 28, 2014

Simon AndersWolfgang Huber

PMID: 25260700

DOI: 10.1093/bioinformatics/btu638

Abstract

A large choice of tools exists for many standard tasks in the analysis of high-throughput sequencing (HTS) data. However, once a project deviates from standard workflows, custom scripts are needed. We present HTSeq, a Python library to facilitate the rapid development of such scripts. H...read more

Mentioned in this Paper

Genome
Computer Programs and Programming
Genomics
Sequencing
High-Throughput Nucleotide Sequencing
Genome, Human
48
2
4204
3

Related Papers

BMC Bioinformatics

p3d--Python module for structural bioinformatics

BMC BioinformaticsAugust 25, 2009
Christian Fufezan, Michael Specht
Bioinformatics

REDItools: high-throughput RNA editing detection made easy

BioinformaticsJune 8, 2013
Ernesto Picardi, Graziano Pesole
Paper Details
References
  • References7
  • Citations2258
1
  • References7
  • Citations2258
12345...
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