Abstract
A catalog of human papillomavirus (HPV) type 16 (HPV-16) E6 and L1 signature nucleotides was used to develop PCR-based oligonucleotide probe systems capable of distinguishing HPV-16 class and subclass variants. Twenty-three E6-specific oligonucleotide probes targeting 13 variant nucleotide positions and 12 L1-specific oligonucleotide probes targeting 6 variant nucleotide positions were used to characterize HPV-16-containing cervicovaginal lavage specimens. Nucleotide positions that could be distinguished included E6 nucleotides 109, 131, 132, 143, 145, 178, 183, 286, 289, 335, 350, 403, and 532 and L1 nucleotides 6695, 6721, 6803, 6854, 6862, and 6994. Combined hybridization patterns were assigned on the basis of the predicted HPV-16 class, subclass, or minor class variants described previously (T. Yamada, C. M. Wheeler, A. L. Halpern, A.-C. M. Stewart, A. Hildesheim, and S.A. Jenison, J. Virol. 69:7743-7753, 1995). The major HPV-16 variant lineages detected included European prototype-like (E-P), Asian (As), Asian-American (AA), and African (Af1 and Af2) lineages. In addition, E-G131, an E-class variant, and AA-G183, an AA-class variant, were also identified. For each clinical specimen, DNA hybridization results were compared ...Continue Reading
References
Dec 1, 1977·Proceedings of the National Academy of Sciences of the United States of America·F SangerA R Coulson
Apr 1, 1992·Journal of Virology·S Y ChanH N Mgaya
Jul 1, 1992·The Journal of General Virology·D EschleL Gissmann
Oct 29, 1992·The New England Journal of Medicine·L A KoutskyN B Kiviat
Nov 11, 1992·International Journal of Cancer. Journal International Du Cancer·N MuñozN Ascunce
Dec 1, 1992·The Journal of Infectious Diseases·J P IcenogleW C Reeves
Sep 1, 1991·Virology·J P IcenogleW E Rawls
Oct 1, 1991·Virology·M C DeauG Orth
Sep 1, 1991·Journal of Clinical Microbiology·L HoH U Bernard
Aug 19, 1991·International Journal of Cancer. Journal International Du Cancer·E A MorrisonR D Burk
Jun 25, 1990·Nucleic Acids Research·A Parton
Sep 19, 1990·Journal of the National Cancer Institute·R M ResnickM M Manos
Dec 1, 1990·Journal of Clinical Microbiology·A J van den BruleJ M Walboomers
Sep 1, 1989·Journal of Medical Virology·A J van den BruleJ M Walboomers
Mar 1, 1988·Journal of Virology·C L Halbert, D A Galloway
Mar 1, 1988·Virology·V BubbR Schlegel
Aug 1, 1985·Virology·K SeedorfW G Röwekamp
Jun 1, 1986·Journal of Virology·T MatsukuraK Yoshiike
Dec 1, 1995·Journal of Virology·T YamadaS A Jenison
Jan 1, 1995·Archives of Virology·J E RamesarA L Williamson
Sep 1, 1995·The Journal of Infectious Diseases·L F XiD A Galloway
Sep 20, 1995·Journal of the National Cancer Institute·G Y HoS Romney
Jul 1, 1995·Journal of Clinical Microbiology·P A HeinzelH Pfister
Jan 21, 1993·International Journal of Cancer. Journal International Du Cancer·J ter MeulenM Pawlita
Apr 1, 1995·Journal of Clinical Microbiology·M V JacobsJ M Walboomers
Jun 7, 1995·Journal of the National Cancer Institute·F X BoschK V Shah
Jan 27, 1995·International Journal of Cancer. Journal International Du Cancer·J L HechtR D Burk
Mar 1, 1995·Obstetrics and Gynecology·O LunguS Silverstein
Sep 1, 1994·Virus Genes·Y FujinagaK Fujinaga
Oct 19, 1994·Journal of the National Cancer Institute·E L FrancoA Ruiz
Sep 1, 1994·The Journal of General Virology·H L SmitsA de Bruyn
Feb 1, 1994·The Journal of Infectious Diseases·A HildesheimM E Sherman
Apr 1, 1994·The Journal of General Virology·P PushkoL Crawford
Dec 1, 1993·Journal of Virology·R KirnbauerJ T Schiller
Sep 1, 1993·Sexually Transmitted Diseases·H M BauerM M Manos
Sep 1, 1993·Sexually Transmitted Diseases·A HildesheimJ Epp
Sep 1, 1993·Sexually Transmitted Diseases·C M WheelerM M Manos
Nov 1, 1993·Journal of Clinical Microbiology·M C DeauG Orth
Jan 1, 1994·British Journal of Cancer·J Eluf-NetoJ M Walboomers
Jun 16, 1993·Journal of the National Cancer Institute·M H SchiffmanS Wacholder
May 1, 1993·Journal of Virological Methods·L M TiebenH L Smits
Nov 1, 1993·Journal of Virology·L HoP Mavromara-Nazos
Nov 1, 1993·Journal of Virology·C K OngL L Villa
Dec 20, 1995·Virology·J P IcenogleS Y Lin
Nov 1, 1995·Journal of Clinical Microbiology·A van BelkumW Quint
Nov 1, 1995·Journal of Virological Methods·A van Belkum
May 1, 1996·Journal of Virology·A C StewartC M Wheeler
Oct 1, 1996·Journal of Virology·M C StöpplerJ Icenogle
Citations
Sep 4, 1999·Diagnostic Molecular Pathology : the American Journal of Surgical Pathology, Part B·M AlemiE Wilander
Jul 19, 2000·The Journal of General Virology·C KämmerH Pfister
Sep 28, 2005·The Journal of General Virology·Nicolas F SchlechtHoward D Strickler
Jan 19, 2007·International Journal of Cancer. Journal International Du Cancer·Laura SicheroLuisa Lina Villa
Sep 20, 2007·International Journal of Gynecological Cancer : Official Journal of the International Gynecological Cancer Society·P Mendoza-LorenzoM Salcedo
Feb 3, 2009·The Journal of Antimicrobial Chemotherapy·Xiaohua YangBenjamin J Luft
Oct 21, 2011·Journal of Virology·Thibault MesplèdeJacques Archambault
Dec 5, 2012·Archives of Virology·D TsakogiannisP Markoulatos
Nov 19, 2013·PloS One·Daan T GeraetsWim G V Quint
Apr 30, 2002·Current Opinion in Infectious Diseases·D Jenkins
Jun 4, 1997·Journal of the National Cancer Institute·L F XiN B Kiviat
Feb 28, 2002·International Journal of Gynecological Cancer : Official Journal of the International Gynecological Cancer Society·T PangJ Ponten
Feb 9, 2012·International Journal of Molecular Sciences·Chara Kleio NtovaPetros Karakitsos
Dec 17, 2011·The American Journal of Surgical Pathology·Justin A BishopWilliam H Westra
Aug 23, 2012·PloS One·Ivan SabolMagdalena Grce
Nov 13, 2010·Reproductive Sciences·Yan HuCi-Xia Shuai
Jun 12, 2012·Archives of Virology·D TsakogiannisP Markoulatos
Aug 12, 2014·PloS One·Sonia PérezMaría de Oña
May 21, 2015·Infectious Agents and Cancer·Luc Magloire Anicet BoumbaMustapha Moulay Ennaji
Nov 1, 2015·The Journal of Infectious Diseases·Ariana HarariUNKNOWN Costa Rica HPV Vaccine Trial Group
Aug 17, 1999·International Journal of Cancer. Journal International Du Cancer·X HuJ Pontén
Apr 3, 2002·The Journal of Experimental Medicine·Xinrong HuMonica Nistér
Jun 17, 1999·Clinical Obstetrics and Gynecology·T V Sedlacek
Jul 27, 2004·Memórias do Instituto Oswaldo Cruz·Márcio R CruzCláudia R F Martins
Nov 22, 2000·The Journal of General Virology·L L VillaE L Franco
Aug 30, 2008·BMC Cancer·Patricia S de Araujo SouzaLuisa L Villa
Jan 25, 2005·Brazilian Journal of Medical and Biological Research = Revista Brasileira De Pesquisas Médicas E Biológicas·V S VerasC R F Martins
Jan 22, 2008·Journal of Medical Virology·Thomas HillerThomas Iftner
Jun 1, 2010·Journal of Medical Virology·Gilbert CornutUNKNOWN Canadian Women's HIV Study Group
Dec 1, 2010·The Journal of Obstetrics and Gynaecology Research·Eda Vrtačnik BokalNina Jančar
May 14, 2011·Journal of Medical Virology·Yan Jun LeiPeter C Angeletti
Apr 12, 2012·Journal of Virology·Iris CornetUNKNOWN IARC HPV Variant Study Group
Jun 2, 2005·International Journal of Cancer. Journal International Du Cancer·Anna H BeskowUlf B Gyllensten
Jul 24, 2008·Journal of Medical Virology·Katiana Junes-GillLuisa Lina Villa
Jun 16, 2011·PloS One·Zigui ChenRobert D Burk
Aug 27, 2013·PloS One·Zigui ChenRobert D Burk
Aug 12, 2014·Journal of Medical Virology·Lijuan YangQiangming Sun
Mar 21, 2015·BioMed Research International·Ana Pavla Almeida Diniz GurgelAntonio Carlos de Freitas
Jul 13, 2001·American Journal of Clinical Pathology·L Pérez-GallegoJ Palacios
Feb 17, 2009·Infectious Agents and Cancer·Rubén López-RevillaLina Riego
Feb 26, 2003·Journal of Medical Virology·María Alejandra PicconiAngélica Teyssié
Jul 3, 2002·Clinical and Diagnostic Laboratory Immunology·Mayumi NakagawaAnna-Barbara Moscicki
Oct 16, 2007·Journal of Medical Virology·Angela PistaMaria Teresa Paixão
Mar 13, 2014·Journal of Medical Virology·Priyanka S GokhaleJayanti Mania-Pramanik
Apr 29, 2005·Journal of Virology·Walter G Hubert
Mar 10, 2001·The Journal of Pathology·A Giannoudis, C S Herrington
Jul 2, 2009·International Journal of Cancer. Journal International Du Cancer·Rosemary E ZunaTravis Teel
May 20, 2011·Journal of Clinical Microbiology·Qinglong ShangHongxi Gu
Dec 17, 2004·Journal of Medical Virology·Simon GagnonUNKNOWN Canadian Women's HIV Study Group, François Coutlée