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Hybrid de novo tandem repeat detection using short and long reads

BMC Medical Genomics

Sep 25, 2015

Guillaume FertinIrena Rusu

Abstract

As one of the most studied genome rearrangements, tandem repeats have a considerable impact on genetic backgrounds of inherited diseases. Many methods designed for tandem repeat detection on reference sequences obtain high quality results. However, in the case of a de novo context, wher...read more

Mentioned in this Paper

Calcinus elegans
Cyartonema elegans
Severe Acute Respiratory Syndrome
Coleonyx elegans
Patterns
Complement System Proteins
Cestrum elegans
Clarkia unguiculata
Clathrulina elegans
Tandem Repeat Sequences
3
16
Paper Details
References
  • References40
  • Citations1
1234
  • References40
  • Citations1
1

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Hybrid de novo tandem repeat detection using short and long reads

BMC Medical Genomics

Sep 25, 2015

Guillaume FertinIrena Rusu

PMID: 26399998

DOI: 10.1186/1755-8794-8-s3-s5

Abstract

As one of the most studied genome rearrangements, tandem repeats have a considerable impact on genetic backgrounds of inherited diseases. Many methods designed for tandem repeat detection on reference sequences obtain high quality results. However, in the case of a de novo context, wher...read more

Mentioned in this Paper

Calcinus elegans
Cyartonema elegans
Severe Acute Respiratory Syndrome
Coleonyx elegans
Patterns
Complement System Proteins
Cestrum elegans
Clarkia unguiculata
Clathrulina elegans
Tandem Repeat Sequences
3
16

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Legionellosis

Legionellosis is caused by Legionella species acquired from environmental sources, principally water sources such as cooling towers, where Legionella grows intracellularly in protozoa within biofilms. Here is the latest research on legionellosis.

Innate Immunity and CNS

Innate immune responses in the CNS are carried out by microglia and astrocytes. Here is the latest research on mechanisms underlying innate immunity in the CNS and its impact on neurophysiology.

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Evaluation of short read metagenomic assembly

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Paper Details
References
  • References40
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  • References40
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1
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