Identification and analysis of Chrysanthemum nankingense NAC transcription factors and an expression analysis of OsNAC7 subfamily members.

PeerJ
Hai WangHuien Zhao

Abstract

NAC (NAM, ATAF1-2, and CUC2) transcription factors (TFs) play a vital role in plant growth and development, as well as in plant response to biotic and abiotic stressors (Duan et al., 2019; Guerin et al., 2019). Chrysanthemum is a plant with strong stress resistance and adaptability; therefore, a systematic study of NAC TFs in chrysanthemum is of great significance for plant breeding. In this study, 153 putative NAC TFs were identified based on the Chrysanthemum nankingense genome. According to the NAC family in Arabidopsis and rice, a rootless phylogenetic tree was constructed, in which the 153 CnNAC TFs were divided into two groups and 19 subfamilies. Moreover, the expression levels of 12 CnNAC TFs belonging to the OsNAC7 subfamily were analyzed in C. nankingense under osmotic and salt stresses, and different tissues were tested during different growth periods. The results showed that these 12 OsNAC7 subfamily members were involved in the regulation of root and stem growth, as well as in the regulation of drought and salt stresses. Finally, we investigated the function of the CHR00069684 gene, and the results showed that CHR00069684 could confer improved salt and low temperature resistance, enhance ABA sensitivity, and lead to...Continue Reading

References

Mar 20, 2004·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Hisako OokaShoshi Kikuchi
Aug 17, 2005·Genes & Development·Minoru KuboTaku Demura
Jun 26, 2007·The Plant Journal : for Cell and Molecular Biology·Kazuo NakashimaKazuko Yamaguchi-Shinozaki
May 1, 2008·The Plant Journal : for Cell and Molecular Biology·Masatoshi YamaguchiTaku Demura
Jan 13, 2009·Biochemical and Biophysical Research Communications·Xingnan ZhengBin Han
May 21, 2009·The Plant Journal : for Cell and Molecular Biology·Pil Joong ChungJu-Kon Kim
Jul 6, 2010·Gene·Mohammed NuruzzamanShoshi Kikuchi
Feb 22, 2011·Protein & Cell·Qingfeng ChenZhiyong Lou
Jun 21, 2011·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Dung Tien LeLam-Son Phan Tran
Jun 29, 2011·The Plant Journal : for Cell and Molecular Biology·Yu-Jun HaoShou-Yi Chen
Mar 27, 2012·Trends in Plant Science·Swati PuranikManoj Prasad
Apr 15, 2014·Current Biology : CB·Matyáš FendrychMoritz K Nowack
Mar 11, 2015·The Plant Journal : for Cell and Molecular Biology·Xu ChenFeng Ming
May 8, 2015·Nature Protocols·Lawrence A KelleyMichael J E Sternberg
Oct 8, 2015·Plant & Cell Physiology·Yasuhito SakurabaNam-Chon Paek
Feb 24, 2016·Frontiers in Plant Science·Yunxie WeiKaimian Li

❮ Previous
Next ❯

Software Mentioned

- Motif Suite
TMHMM
MEGA
Phyre2
ClustalW
ProtParam
MEME
HMMER3

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.