Identification of breast cancer hub genes and analysis of prognostic values using integrated bioinformatics analysis

Cancer Biomarkers : Section a of Disease Markers
Enhao Fang, Xiuqing Zhang

Abstract

Breast cancer (BC) is the second most common cause of death from cancer in women in the United States. As the molecular mechanism of BC has not yet been completely discovered, identification of hub genes and pathways of this disease is of importance for revealing molecular mechanism of breast cancer initiation and progression. This study aimed to identify potential biomarkers and survival analysis of hub genes for BC treatment. The differentially expressed genes (DEGs) between breast cancer and normal cells were screened using microarray data obtained from the Gene Expression Omnibus (GEO) database. Gene ontology (GO) and KEGG pathway enrichment analyses were performed for DEGs using DAVID database, the protein-protein interaction (PPI) network was constructed using the Cytoscape software, and module analysis was performed using MCODE. Then, overall survival (OS) analysis of hub genes was performed by the Kaplan-Meier plotter online tool. Finally, the potential molecular agents were identified with Connectivity Map (cMap) database. A total of 585 DEGs were obtained, which were significantly enriched in the terms related to positive regulation of cell migration, regulation of cell proliferation and focal adhesion. KEGG pathway a...Continue Reading

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Citations

Mar 22, 2019·Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire·Yu-Fei Wang, Jie Han
Mar 16, 2021·Frontiers in Oncology·Karen M GallegosSyreeta L Tilghman
Mar 30, 2021·Frontiers in Pharmacology·Huimin JiangMeijuan Chen
Aug 27, 2021·Analytical Cellular Pathology (Amsterdam)·Zhongjun Tang, Kebo Cai

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Datasets Mentioned

BETA
GPL571
GSE10797

Software Mentioned

Cytoscape
Molecular Complex Detection ( MCODE )
pheatmap
MCODE
Connectivity Map ( cMap
R
cMap
limma
Affy
Search Tool for the Retrieval of (

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