Sep 15, 2017

Identification of sites of 2'-O-methylation vulnerability in human ribosomal RNAs by systematic mapping

Scientific Reports
Sunny SharmaDenis L J Lafontaine

Abstract

Ribosomal RNA modifications are important in optimizing ribosome function. Sugar 2'-O-methylation performed by fibrillarin-associated box C/D antisense guide snoRNAs impacts all steps of translation, playing a role in disease etiology (cancer). As it renders adjacent phosphodiester bonds resistant to alkaline treatment, 2'-O-methylation can be monitored qualitatively and quantitatively by applying next-generation sequencing to fragments of randomly cleaved RNA. We remapped all sites of 2'-O-methylation in human rRNAs in two isogenic diploid cell lines, one producing and one not producing the antitumor protein p53. We identified sites naturally modified only partially (confirming the existence in cells of compositionally distinct ribosomes with potentially specialized functions) and sites whose 2'-O-methylation is sensitive to p53. We mapped sites particularly vulnerable to a reduced level of the methyltransferase fibrillarin. The remarkable fact that these are largely sites of natural hypomodification provides initial insights into the mechanism of partial RNA modification. Sites where methylation appeared vulnerable lie peripherally on the 3-D structure of the ribosomal subunits, whereas the numerous modifications present at t...Continue Reading

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Mentioned in this Paper

TP53 gene
Health Center
Base
MDM2 protein, human
Chromosomal Proteins, Non-Histone
Dimethoxymethane
Protein Methylation
Cleaved
Fibrillarin
Regulation of Biological Process

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