Illumina MiSeq sequencing investigation on the contrasting soil bacterial community structures in different iron mining areas

Environmental Science and Pollution Research International
Chen HongYang Li

Abstract

Mine activities leaked heavy metals into surrounding soil and may affected indigenous microbial communities. In the present study, the diversity and composition of the bacterial community in soil collected from three regions which have different pollution degree, heavy pollution, moderate pollution, and non-pollution, within the catchment of Chao River in Beijing City, were compared using the Illumina MiSeq sequencing technique. Rarefaction results showed that the polluted area had significant higher bacterial alpha diversity than those from unpolluted area. Principal component analysis (PCA) showed that microbial communities in the polluted areas had significant differences compared with the unpolluted area. Moreover, PCA at phylum level and Matastats results demonstrated that communities in locations shared similar phyla diversity, indicating that the bacterial community changes under metal pollution were not reflected on phyla structure. At genus level, the relative abundance of dominant genera changed in sites with degrees of pollution. Genera Bradyrhizobium, Rhodanobacter, Reyranella, and Rhizomicrobium significantly decreased with increasing pollution degree, and their dominance decreased, whereas several genera (e.g., St...Continue Reading

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Citations

Aug 1, 2016·The Science of the Total Environment·Julie FoulonMichel Chalot
Sep 7, 2016·International Journal of Environmental Research and Public Health·Jing MaFu Chen
Oct 17, 2016·Environmental Science and Pollution Research International·Xihui XuZhenguo Shen
Apr 9, 2016·Environmental Science. Processes & Impacts·Fu ChenJing Ma
Feb 13, 2018·Environmental Science and Pollution Research International·Hui LiYaoyu Zhou
Oct 4, 2017·Applied and Environmental Microbiology·Chen XiaoZheng-Hong Xu
Feb 18, 2018·Brazilian Journal of Microbiology : [publication of the Brazilian Society for Microbiology]·Camila Cesário FernandesEliana Gertrudes de Macedo Lemos
Nov 2, 2018·Environmental Science and Pollution Research International·Fengqiu AnJialong Lv
Sep 16, 2017·Microbiome·Lee J KerkhofLora R McGuinness
Aug 6, 2017·Environmental Science and Pollution Research International·Zhimin YuanJun Yao
Jul 18, 2020·International Journal of Phytoremediation·Sara Perl EgendorfZhongqi Cheng
Jul 17, 2020·Environmental Science and Pollution Research International·Alice Kimie Martins MoritaEdson Wendland
Sep 9, 2017·Environmental Science and Pollution Research International·Hongcui DaiPeng Sui
May 23, 2018·International Journal of Environmental Research and Public Health·Zhanbin LuoShaoliang Zhang
Mar 16, 2018·Environmental Science and Pollution Research International·Youfa LuoLian Yang
May 15, 2018·International Journal of Environmental Research and Public Health·Esmeralda G Blanco-EnríquezBeatriz A Rocha-Gutiérrez
Feb 4, 2019·Extremophiles : Life Under Extreme Conditions·Elcia Margareth Souza BritoMarisol Goñi-Urriza
Apr 25, 2020·International Journal of Environmental Research and Public Health·Siyuan ZhangHongwei Liu
Jun 2, 2017·Environmental Science and Pollution Research International·Hoang Nam PhamMarie-Geneviève Dijoux-Franca
Aug 23, 2017·Scientific Reports·Jihang JiangXiawei Peng
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Feb 18, 2020·Journal of Applied Genetics·K K Nkongolo, R Narendrula-Kotha
Dec 18, 2020·Frontiers in Microbiology·Fengfeng ZhangMikael Motelica-Heino
Jan 12, 2021·Computational and Structural Biotechnology Journal·Xiuli HaoYu-Rong Liu
May 6, 2021·Environmental Science and Pollution Research International·Lina LinZhengguo Song

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