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Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements

PloS One

Sep 4, 2014

Rajiv C. McCoyAnna-Sophie Fiston-Lavier

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Abstract

High-throughput DNA sequencing technologies have revolutionized genomic analysis, including the de novo assembly of whole genomes. Nevertheless, assembly of complex genomes remains challenging, in part due to the presence of dispersed repeats which introduce ambiguity during genome reco...read more

Mentioned in this Paper

DNA Sequence
Sampling - Surgical Action
Repetitive Region
DNA Transposable Elements
Euchromatin
Polymerase Chain Reaction
X Chromosome
Drosophila melanogaster
Heterochromatin
Single Nucleotide Polymorphism
47
2
336
Paper Details
References
    • References39
    • Citations48
    • References39
    • Citations48
  • Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements

    PloS One

    Sep 4, 2014

    Rajiv C. McCoyAnna-Sophie Fiston-Lavier

    PMID: 25188499

    DOI: 10.1371/journal.pone.0106689

    Abstract

    High-throughput DNA sequencing technologies have revolutionized genomic analysis, including the de novo assembly of whole genomes. Nevertheless, assembly of complex genomes remains challenging, in part due to the presence of dispersed repeats which introduce ambiguity during genome reco...read more

    Mentioned in this Paper

    DNA Sequence
    Sampling - Surgical Action
    Repetitive Region
    DNA Transposable Elements
    Euchromatin
    47
    2
    336

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    Paper Details
    References
    • References39
    • Citations48
    • References39
    • Citations48
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