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Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements

PloS One

Sep 5, 2014

Rajiv C McCoyAnna-Sophie Fiston-Lavier

Abstract

High-throughput DNA sequencing technologies have revolutionized genomic analysis, including the de novo assembly of whole genomes. Nevertheless, assembly of complex genomes remains challenging, in part due to the presence of dispersed repeats which introduce ambiguity during genome reco...read more

Mentioned in this Paper

Repetitive Region
Heuristics
Abnormal Fragmented Structure
Genome
Botryllus schlosseri
Segmental Duplications, Genomic
Transposition of Intestine (Disorder)
Pseudo brand of pseudoephedrine
Inbred Strain
Ncbi Taxonomy
46
2
325
Paper Details
References
  • References57
  • Citations56
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  • References57
  • Citations56
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Considering transposable element diversification in de novo annotation approaches

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© 2020 Meta ULC. All rights reserved

Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements

PloS One

Sep 5, 2014

Rajiv C McCoyAnna-Sophie Fiston-Lavier

PMID: 25188499

DOI: 10.1371/journal.pone.0106689

Abstract

High-throughput DNA sequencing technologies have revolutionized genomic analysis, including the de novo assembly of whole genomes. Nevertheless, assembly of complex genomes remains challenging, in part due to the presence of dispersed repeats which introduce ambiguity during genome reco...read more

Mentioned in this Paper

Repetitive Region
Heuristics
Abnormal Fragmented Structure
Genome
Botryllus schlosseri
Segmental Duplications, Genomic
Transposition of Intestine (Disorder)
Pseudo brand of pseudoephedrine
Inbred Strain
Ncbi Taxonomy
46
2
325

Similar Papers Found In These Feeds

Transposable Elements

Transposable elements (tes) have profound effects on the structure, function and evolution of their host genomes.

Copy Number Variation

Copy number variation refers to alterations in the number of gene copies or DNA sequences. It can be a duplication, amplification, or a deletion event. Here is the latest research.

Related Papers

PloS One

Considering transposable element diversification in de novo annotation approaches

PloS OneFebruary 10, 2011
Timothée FlutreHadi Quesneville
Paper Details
References
  • References57
  • Citations56
12345...
  • References57
  • Citations56
12345...
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