Impact of adjustments for intermediate phenotypes on the power to detect linkage

Genetic Epidemiology
D K ArnettT A Sellers

Abstract

Since the manifestation of a complex disease is likely to be influenced through multiple genetic and/or environmental pathways, it may be advantageous to adjust for these multiple factors in a genetic analysis of a complex quantitative trait. Sib-pair linkage analysis was performed on the simulated complex quantitative trait Q1 after adjustment for age, sex, and the environmental factor (i.e., minimally adjusted) and all combinations of the four intermediate phenotypes Q2, Q3, Q4, and Q5 (n = 15) for all 200 replications of the nuclear families data set. From the minimally adjusted Q1, the power to detect suggestive linkage to any of the three loci affecting Q1 was 0.585 with a false positive rate of 0.0025. Adjusting Q1 for Q3 increased the power to detect suggestive linkage to 0.860 with a similar false positive rate. Additional adjustments for Q2, Q4, and Q5 yielded no substantial improvements in power nor changes in the false positive rate. The power to detect significant linkage was also substantially improved after adjustment of Q1 for Q3 with no change in the false positive rate. The adjustment of a complex trait for other factors in the causal pathway reduces the phenotype variability and enhances the ability to detect ...Continue Reading

References

Mar 1, 1972·Behavior Genetics·J K Haseman, R C Elston
Sep 30, 1994·Science·E S Lander, N J Schork
Dec 1, 1995·Trends in Genetics : TIG·D E Weeks, G M Lathrop
Apr 1, 1996·Nature Genetics·J S WitteN J Schork
Apr 1, 1996·Nature Genetics·D Curtis
Dec 5, 1996·Nature·C O'Brien

❮ Previous
Next ❯

Citations

Jun 9, 2004·Genetic Epidemiology·Elizabeth R HauserMichael Boehnke
Nov 10, 2001·Arteriosclerosis, Thrombosis, and Vascular Biology·J M PeacockG Heiss
May 18, 2010·International Journal of Cancer. Journal International Du Cancer·Jovanny ZabaletaAugusto C Ochoa

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.