Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli.

Plant Physiology
Kousuke HanadaShin-Han Shiu

Abstract

Plants have substantially higher gene duplication rates compared with most other eukaryotes. These plant gene duplicates are mostly derived from whole genome and/or tandem duplications. Earlier studies have shown that a large number of duplicate genes are retained over a long evolutionary time, and there is a clear functional bias in retention. However, the influence of duplication mechanism, particularly tandem duplication, on duplicate retention has not been thoroughly investigated. We have defined orthologous groups (OGs) between Arabidopsis (Arabidopsis thaliana) and three other land plants to examine the functional bias of retained duplicate genes during vascular plant evolution. Based on analysis of Gene Ontology categories, it is clear that genes in OGs that expanded via tandem duplication tend to be involved in responses to environmental stimuli, while those that expanded via nontandem mechanisms tend to have intracellular regulatory roles. Using Arabidopsis stress expression data, we further demonstrated that tandem duplicates in expanded OGs are significantly enriched in genes that are up-regulated by biotic stress conditions. In addition, tandem duplication of genes in an OG tends to be highly asymmetric. That is, ex...Continue Reading

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Citations

Jan 8, 2011·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Jan BartošJaroslav Doležel
Jun 1, 2011·Journal of Plant Research·Kousuke HanadaMasanori Okamoto
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