PMID: 10553904DOI: 10.1038/44766Nov 30, 1999
Inferring the historical patterns of biological evolution
Nature
Mark Pagel
Abstract
Phylogenetic trees describe the pattern of descent amongst a group of species. With the rapid accumulation of DNA sequence data, more and more phylogenies are being constructed based upon sequence comparisons. The combination of these phylogenies with powerful new statistical approaches for the analysis of biological evolution is challenging widely held beliefs about the history and evolution of life on Earth.
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Jun 20, 2007·Proceedings of the National Academy of Sciences of the United States of America·Fred SpoorAlan Walker
Jun 20, 2014·Proceedings. Biological Sciences·Nicholas A MasonKevin J Burns
May 16, 2014·Proceedings. Biological Sciences·Corey J A BradshawMiguel B Araujo
May 29, 2014·Nature Communications·Dirk ZeussStefan Brunzel
Apr 11, 2014·Proceedings. Biological Sciences·Eva C Garrett, Michael E Steiper
May 9, 2014·Oecologia·Werner UlrichAnton Fischer
May 9, 2007·Proceedings of the National Academy of Sciences of the United States of America·Craig R WhiteSteven L Chown
Feb 7, 2014·Systematic Biology·Lam si Tung Ho, Cécile Ané
Feb 5, 2013·Comparative Biochemistry and Physiology. Part A, Molecular & Integrative Physiology·Alexander Riek, Jorn Bruggeman
Oct 24, 2013·Systematic Biology·Graham J Slater, Matthew W Pennell
May 9, 2014·Nature Communications·Jörg AlbrechtNina Farwig
Jun 6, 2014·BMC Evolutionary Biology·Stephen H Montgomery, Nicholas I Mundy
May 23, 2014·Biology Letters·S E SantanaRui Diogo
Mar 14, 2002·Proceedings of the National Academy of Sciences of the United States of America·Simon M Reader, Kevin N Laland
Jun 13, 2014·Proceedings. Biological Sciences·Michael C Grundler, Daniel L Rabosky
Apr 9, 2014·Microbiome·Florent E AnglyGene W Tyson
Mar 19, 2014·Molecular Phylogenetics and Evolution·Bettina M Scheel, Bernhard Hausdorf
Oct 21, 2004·Proceedings of the National Academy of Sciences of the United States of America·Emmanuel J P DouzeryHervé Philippe
Apr 1, 2014·Molecular Biology and Evolution·Lu ChenAraxi O Urrutia
Apr 4, 2014·Nature Communications·Roger B J BensonRichard J Butler
Mar 27, 2004·Proceedings of the National Academy of Sciences of the United States of America·Robert BelshawMichael Tristem
Jun 27, 2014·Nature Communications·William L AllenJames P Higham
Apr 23, 2014·Proceedings of the National Academy of Sciences of the United States of America·Evan L MacLeanYini Zhao
May 6, 2014·Trends in Molecular Medicine·Matthew HartfieldSamuel Alizon
Jul 22, 2014·Nature·B J A PolluxDavid N Reznick
Jul 9, 2014·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·José M GómezChristian Peter Klingenberg
Jul 21, 2014·Journal of Human Evolution·Robert S Scott, W Andrew Barr
Jul 11, 2014·Proceedings. Biological Sciences·Imran KhaliqMarkus Pfenninger
Aug 28, 2014·Bioinformatics·Christina Kratsch, Alice C McHardy
Jul 2, 2010·Annual Review of Genomics and Human Genetics·Daniel E JanesScott V Edwards
Aug 1, 2014·Biology Letters·Elisabeth N BuiJoseph T Miller
Jul 19, 2014·Nature Communications·Brent D MishlerJoseph T Miller
Aug 22, 2014·Proceedings. Biological Sciences·Tim NewboldAndy Purvis
Sep 20, 2011·Animal Cognition·Evan L MacLeanVictoria Wobber
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Oct 3, 2014·Proceedings. Biological Sciences·Moritz MuschickWalter Salzburger
Oct 3, 2014·Proceedings. Biological Sciences·B AndersonAllan G Ellis
May 3, 2014·Systematic Biology·Dean C Adams
Nov 5, 2002·Nature Reviews. Genetics·S Blair Hedges
May 2, 2014·Nucleic Acids Research·Naama Wald, Hanah Margalit
Mar 14, 2014·PloS One·Cristian Gutierrez-IbañezDouglas R Wylie
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Mar 19, 2014·PloS One·Matthew R E SymondsPatrick-Jean Guay
Mar 29, 2007·Brain, Behavior and Evolution·Alexander A PollenHans A Hofmann
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Feb 18, 2016·Annals of Botany·José M GómezFrancisco Perfectti
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Nov 13, 2015·Systematic Biology·Gemma G R MurrayJohn J Welch
Jun 15, 2011·The American Naturalist·Rob P FreckletonWalter Jetz
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May 11, 2006·The American Naturalist·Mark Pagel, Andrew Meade
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Dec 15, 2015·The American Naturalist·Pasquale RaiaMikael Fortelius
Jul 29, 2006·The American Naturalist·Albert B PhillimoreIan P F Owens
Jul 16, 2013·The American Naturalist·R Will Stein, Tony D Williams
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Apr 8, 2015·Proceedings of the National Academy of Sciences of the United States of America·Joanna BakerChris Venditti
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Nov 26, 2014·Proceedings of the National Academy of Sciences of the United States of America·Christopher OpieRuth Mace
May 6, 2015·Proceedings of the National Academy of Sciences of the United States of America·Paul E Marek, Wendy Moore
Jul 29, 2015·Ecological Applications : a Publication of the Ecological Society of America·Ylenia ChiariIsabella Capellini
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Jan 21, 2016·Proceedings of the National Academy of Sciences of the United States of America·David LabonteWalter Federle
Jan 27, 2016·Proceedings of the National Academy of Sciences of the United States of America·Sarah Benson-AmramKay E Holekamp
Mar 5, 2016·The ISME Journal·Ember M MorrisseyBruce A Hungate
Jan 1, 2015·Virus Evolution·Cody J WarrenDohun Pyeon
Dec 18, 2015·Proceedings. Biological Sciences·Mark N Puttick, Gavin H Thomas
Oct 17, 2015·Systematic Biology·Antigoni Kaliontzopoulou, Dean C Adams
Mar 26, 2016·Frontiers in Neuroanatomy·R Maarten van DijkIrmgard Amrein
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Sep 3, 2004·Evolution; International Journal of Organic Evolution·Rachel Collin
Nov 4, 2004·Evolution; International Journal of Organic Evolution·Joseph Hughes, Alfried P Vogler
Jun 1, 2005·Biological Reviews of the Cambridge Philosophical Society·M Hernández Fernández, Elisabeth S Vrba
Jul 30, 2005·Evolution; International Journal of Organic Evolution·Geoffrey E Morse, Brian D Farrell
Jan 7, 2006·Evolution; International Journal of Organic Evolution·Sarah A SmithJohn J Wiens
Jan 13, 2006·Evolution; International Journal of Organic Evolution·Thomas F Hansen, Steven Hecht Orzack
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Jul 22, 2005·Journal of Evolutionary Biology·C Lopez-VaamondeJ M Cook
Aug 5, 2003·Evolution; International Journal of Organic Evolution·John P Huelsenbeck, Bruce Rannala
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Jun 23, 2007·Journal of Evolutionary Biology·S A M VarelaR H Wagner
Apr 4, 2008·Evolution; International Journal of Organic Evolution·Simone ImmlerTim R Birkhead
Feb 20, 2007·Journal of Evolutionary Biology·G M Schneeweiss
May 15, 2007·Ecology Letters·Lauren B Buckley, Walter Jetz
Dec 23, 2006·The Journal of Animal Ecology·Thomas J WebbR P Freckleton
Jul 5, 2006·Evolution; International Journal of Organic Evolution·Brian C O'MearaPeter C Wainwright
Sex ratio, life-history invariants, and patterns of sex change in a family of protandrous gastropods
Jun 3, 2006·Evolution; International Journal of Organic Evolution·Rachel Collin
Apr 28, 2006·Evolution; International Journal of Organic Evolution·T Jonathan Davies, Vincent Savolainen
Oct 25, 2007·Journal of Evolutionary Biology·Ilia J LeitchMichael F Fay
Jan 13, 2006·Journal of Evolutionary Biology·N KolmJ D Reynolds
Nov 3, 2007·Evolution; International Journal of Organic Evolution·Emmanuel Paradis
Mar 14, 2007·Evolution; International Journal of Organic Evolution·Michael P Gillman
Apr 19, 2007·Evolution; International Journal of Organic Evolution·Albert B PhillimoreIan P F Owens
May 1, 2007·Journal of Evolutionary Biology·L Z GaramszegiN Saino
Aug 18, 2006·Ecology Letters·L Z Garamszegi
Apr 8, 2006·Journal of Evolutionary Biology·Miguel Verdú
Jun 20, 2006·Journal of Evolutionary Biology·Daniel S Moen
Oct 3, 2007·Evolution; International Journal of Organic Evolution·F Javier Pérez-BarberíaRobin I M Dunbar
May 6, 2006·Journal of Evolutionary Biology·C ArnalY Desdevises
Jan 23, 2008·Evolution; International Journal of Organic Evolution·Nils AnthesNico K Michiels
Dec 12, 2007·Evolution; International Journal of Organic Evolution·Oddmund KlevenJan T Lifjeld
Dec 7, 2007·Evolution; International Journal of Organic Evolution·Luke HolmanRhonda R Snook
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Mar 29, 2016·PeerJ·Marta Borgi, Bonaventura Majolo
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Jul 15, 2015·Systematic Biology·Patrick J KrugÁngel A Valdés
Oct 9, 2015·Proceedings. Biological Sciences·Xia Wang, Julia A Clarke
Dec 1, 2015·PeerJ·Gary D PowneyNick J B Isaac
Mar 27, 2015·Annals of Botany·Zoe A PanchenRobert Fahey
Oct 16, 2015·PeerJ·Xavier ArnanJavier Retana
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Sep 16, 2015·The ISME Journal·Marta Goberna, Miguel Verdú
Sep 12, 2015·PeerJ·Charles C Frasier
Sep 1, 2015·Frontiers in Neuroscience·Douglas R WylieAndrew N Iwaniuk
Aug 28, 2015·Annals of Botany·Marcelo R PaceVeronica Angyalossy
Jun 10, 2015·AoB Plants·Kundong BaiDebing Jiang
Aug 19, 2015·Frontiers in Neuroanatomy·Jeremy R CorfieldDouglas R Wylie
Jun 27, 2015·Genome Biology and Evolution·Fabian Zimmer, Stephen H Montgomery
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Nov 26, 2014·BMC Evolutionary Biology·Takao K SuzukiHideki Sezutsu
Jun 19, 2015·Proceedings. Biological Sciences·Eleanor M CavesClaire N Spottiswoode
Jan 31, 2015·The Journal of Parasitology·Hillary S YoungKristofer M Helgen
Nov 28, 2014·BMC Evolutionary Biology·Michael G Elliot, Arne O Mooers
Dec 31, 2014·BMC Evolutionary Biology·Kevin J LoopeMichael Juhl
Feb 13, 2015·Systematic Biology·Eric W Goolsby
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Jan 11, 2014·Cerebral Cortex·Gerard MuntanéChet C Sherwood
Sep 13, 2014·Science·Luke O FrishkoffGretchen C Daily
Apr 20, 2016·Proceedings of the National Academy of Sciences of the United States of America·Yinhua WangTim F Cooper
Nov 15, 2014·Science·Dieter Lukas, Elise Huchard
Apr 22, 2016·Proceedings. Biological Sciences·Paula Stockley, Liane Hobson
Dec 6, 2014·Science·Eléonore DurandVincent Castric
Apr 15, 2015·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·C L NunnJennifer H Fewell
Dec 17, 2014·Molecular Biology and Evolution·Juan C OpazoJay F Storz
Mar 3, 2015·Genome Génome / Conseil National De Recherches Canada·Thomas A HenrySteven G Newmaster
Feb 18, 2015·Frontiers in Genetics·Conchita AlonsoCarlos M Herrera
Dec 17, 2014·Journal of Experimental Botany·Hui Liu, C P Osborne
Dec 5, 2014·AoB Plants·Ana NovoaDavid M Richardson
Feb 6, 2015·PeerJ·Kevin WeitemierAaron Liston
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Nov 12, 2014·Oecologia·Nicholas P C HorrocksB I Tieleman
Jan 7, 2015·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·T Jonathan Davies
Jan 7, 2015·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·W Jetz, R P Freckleton
Dec 5, 2014·Proceedings. Biological Sciences·Collin M McCabeC L Nunn
Jan 27, 2015·Proceedings. Biological Sciences·Tomochika FujisawaTimothy G Barraclough
Minimal temperature of pollen germination controls species distribution along a temperature gradient
May 19, 2016·Annals of Botany·Sergey Rosbakh, Peter Poschlod
Feb 18, 2016·Systematic Biology·Eric H Roalson, Wade R Roberts
Apr 14, 2016·Systematic Biology·Lucas J LegendreJorge Cubo
May 26, 2016·Molecular Biology and Evolution·Xavier PrudentMichael Hiller
Jul 16, 2016·BioMed Research International·Juan Wang
Jun 19, 2016·Systematic Biology·Eric W Goolsby
Jul 3, 2016·Psychonomic Bulletin & Review·Mark Pagel
Aug 30, 2011·Journal of Human Evolution·Thomas R ReinChristoph Zollikofer
Commensal associations and benthic habitats shape macroevolution of the bivalve clade Galeommatoidea
Jul 8, 2016·Proceedings. Biological Sciences·Jingchun LiEllen E Strong
Jul 14, 2016·Journal of Experimental Botany·Jeroni GalmésÜlo Niinemets
Jul 13, 2016·Annals of Botany·Marcelo Reginato, Fabián A Michelangeli
Aug 31, 2010·Molecular Phylogenetics and Evolution·László G NagyCsaba Vágvölgyi
May 17, 2006·Trends in Ecology & Evolution·Mark Pagel
Aug 26, 2016·Oecologia·Bastien CastagneyrolDominique Piou
Sep 1, 2016·Biology Letters·Camille SessegoloAnnabelle Haudry
Feb 15, 2008·Molecular Phylogenetics and Evolution·Raphaël CovainJuan I Montoya-Burgos
Aug 23, 2016·Nature Genetics·Martin MalmstrømSissel Jentoft
Sep 9, 2016·Proceedings. Biological Sciences·Joshua P Scholl, John J Wiens
Jun 29, 2016·Oecologia·Lanping LiGuozhen Du
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May 17, 2006·Trends in Ecology & Evolution·Ruth Mace, Clare J Holden
Oct 14, 2016·Applied Microbiology and Biotechnology·Ado Van AsscheBart Lievens
Nov 2, 2016·The ISME Journal·Sevda Haghi KiaJose G Maciá-Vicente
Nov 3, 2016·Heredity·P A MartinezC J Bidau
May 13, 2009·Annals of Botany·Jindrich ChrtekJudith Fehrer
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Dec 25, 2016·Microbial Ecology·Antje DonnerUlf Karsten
Jun 30, 2011·Systematic Biology·L Z Garamszegi, A P Møller
Jan 15, 2017·Annals of Botany·Víctor M EscobedoErnesto Gianoli
Feb 9, 2017·Genome Génome / Conseil National De Recherches Canada·Nicholas W JefferyT Ryan Gregory
Feb 6, 2017·ELife·Thomas BadetSylvain Raffaele
Jul 17, 2015·Scientific Reports·Hui LiuQing Ye
Nov 25, 2016·Scientific Reports·Louise PeckreEmmanuelle Pouydebat
Feb 12, 2017·Science·J L CantalapiedraM T Alberdi
Jan 7, 2016·Scientific Reports·Thodoris ArgyriouMarcelo R Sánchez-Villagra
Sep 23, 2011·Mycologia·László G NagyTamás Papp
Jan 8, 2016·Mycologia·Siti Izera IsmailMark L Gleason
Mar 25, 2017·Journal of Evolutionary Biology·L M Arenas, M Stevens
Nov 21, 2015·Scientific Reports·Laura A B WilsonWalter Salzburger
Jun 26, 2015·Scientific Reports·Ming KangHongwen Huang
Jun 19, 2016·Physiology & Behavior·Allyson K MenziesCraig K R Willis
Apr 26, 2017·The New Phytologist·Oscar J Valverde-BarrantesChristopher B Blackwood
Apr 11, 2017·Evolution; International Journal of Organic Evolution·Luke T DunningP A Christin
Sep 25, 2016·Molecular Phylogenetics and Evolution·Prashant P SharmaWard C Wheeler
Sep 25, 2016·Molecular Phylogenetics and Evolution·Jairo PatiñoAlain Vanderpoorten
Sep 18, 2016·Molecular Phylogenetics and Evolution·Melisa OlaveMariana Morando
Apr 13, 2017·Molecular Ecology·Lucie KropáčkováJakub Kreisinger
Apr 12, 2017·Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution·Takao K Suzuki
Apr 24, 2017·Journal of Evolutionary Biology·A C R GomesG C Cardoso
Jan 16, 2016·Journal of Human Evolution·Gabrielle A Russo
Apr 6, 2017·The New Phytologist·Maximilian LarterSylvain Delzon
Nov 25, 2015·The New Phytologist·Angelino Carta, Lorenzo Peruzzi
Feb 27, 2016·The Journal of Comparative Neurology·Stephen H MontgomerySwidbert R Ott
Aug 27, 2016·Molecular Ecology·Stephen H Montgomery, Judith E Mank
Nov 24, 2016·Ecology and Evolution·Shuang XingBrett R Scheffers
Mar 23, 2017·Evolution; International Journal of Organic Evolution·Patrick ArnoldMartin S Fischer
Apr 14, 2016·Ecology and Evolution·Marta Linde-MedinaRui Diogo
May 12, 2017·The Journal of Animal Ecology·Irene M A BenderMatthias Schleuning
How phylogeny and foraging ecology drive the level of chemosensory exploration in lizards and snakes
Dec 24, 2016·Journal of Evolutionary Biology·Simon BaeckensW E Cooper
Mar 8, 2005·Research in Microbiology·Mirium KhwajaMilton H Saier
May 10, 2005·Molecular Phylogenetics and Evolution·Karla S C YotokoVera N Solferini
Feb 3, 2009·Trends in Parasitology·Simon Fellous, Lucie Salvaudon
Aug 29, 2014·Ecology and Evolution·Olivier FloresEvan Weiher
Apr 14, 2006·Systematic Biology·John A Finarelli, John J Flynn
Oct 25, 2006·Systematic Biology·David Hearn, Mark Huber
Oct 24, 2014·PloS One·Patricia Sánchez-Baracaldo, Gavin H Thomas
Dec 21, 2014·BMC Evolutionary Biology·Zongji WangQi Zhou
Mar 5, 2014·Ecology Letters·Timothy R BakerOliver L Phillips
Jan 31, 2014·Evolution; International Journal of Organic Evolution·Oliver KrügerFritz Trillmich
Feb 17, 2017·BMC Evolutionary Biology·Rafael Molina-Venegas, Miguel Á Rodríguez
Jan 6, 2017·Global Change Biology·Leonardo D BacigalupeEnrico L Rezende
Feb 25, 2017·Journal of Molecular Evolution·Betül KacarEric A Gaucher
Dec 17, 2016·BMC Evolutionary Biology·Mónica AriasViolaine Llaurens
Feb 12, 2017·The New Phytologist·Alexander M KochJohn N Klironomos
Mar 3, 2017·PloS One·José J Cuervo, A P Møller
Jan 18, 2017·PloS One·Stephanie S GervasiAndrew R Blaustein
Apr 1, 2017·PloS One·Dara N OrbachBernd Würsig
Dec 23, 2016·Nature Communications·Ferran SayolDaniel Sol
Apr 8, 2017·Scientific Reports·Donna Lisa De-SilvaMarianne Elias
Jan 12, 2017·Evolution; International Journal of Organic Evolution·Miriam Leah ZelditchDonald L Swiderski
Nov 24, 2016·Nature·Martin BullaB Kempenaers
Mar 14, 2017·PeerJ·Andrey Rudoy, Ignacio Ribera
Feb 15, 2017·Journal of Insect Physiology·Branwen MessamahJohannes Overgaard
Apr 10, 2017·Genome Biology and Evolution·Amy M BoddyDerek E Wildman
Jan 13, 2017·Scientific Reports·Bret A MooreEsteban Fernández-Juricic
Feb 15, 2017·Ecology Letters·Constantin M ZohnerSusanne S Renner
Dec 7, 2016·Evolution; International Journal of Organic Evolution·Piotr MiniasPeter O Dunn
Mar 24, 2017·Journal of Human Evolution·Marian DagostoThierry Smith
Feb 10, 2017·Journal of Evolutionary Biology·N Mongiardino KochM J Ramírez
Dec 23, 2016·Plant Biology·X Moreira, Ian S Pearse
Feb 25, 2017·PloS One·Miquel Vall-Llosera, Phillip Cassey
Feb 9, 2017·Evolution; International Journal of Organic Evolution·Allison J Shultz, Kevin J Burns
Mar 21, 2017·Journal of Human Evolution·Thomas R ReinKaterina Harvati
Nov 25, 2016·Evolution; International Journal of Organic Evolution·Kobe MartinTracey L Rogers
Jan 6, 2017·BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology·John J Wiens
Feb 9, 2017·Ecology and Evolution·Víctor H Jiménez-ArcosRaúl Cueva Del Castillo
Dec 23, 2016·The New Phytologist·Julio V SchneiderGeorg Zizka
May 26, 2017·Genome Biology and Evolution·Sarah Sander LowerDavid Hall
Mar 16, 2017·Molecular Phylogenetics and Evolution·Thomas Marcussen, Andrea S Meseguer
Jan 20, 2017·Proceedings. Biological Sciences·Martha M MuñozS N Patek
Feb 17, 2017·Annals of Botany·Chase M MasonLisa A Donovan
Nov 20, 2016·Ecology·Walter D KoenigMario B Pesendorfer
Jun 9, 2017·Systematic Biology·Florent MazelMatthew W Pennell
Jun 14, 2017·Journal of Evolutionary Biology·V García-NavasJ Ortego
Jun 29, 2016·Biological Reviews of the Cambridge Philosophical Society·Sara ManafzadehElena Conti
Apr 5, 2011·Systematic Biology·Jonathan M Eastman, Andrew Storfer
Morphological structures for potential sperm storage in poeciliid fishes. Does superfetation matter?
Apr 13, 2017·Journal of Morphology·Claudia Olivera-TlahuelJ Jaime Zúñiga-Vega
Jun 29, 2017·Molecular Biology and Evolution·Gigi Y LauJeffrey G Richards
May 10, 2017·Current Biology : CB·Will Cornwell, S Nakagawa
May 13, 2017·The Journal of Experimental Biology·Bettina ErreggerArne K D Schmidt
Jan 31, 2016·Molecular Phylogenetics and Evolution·Serena E DoolD S Jacobs
Sep 17, 2004·Systematic Biology·Mark Pagel, Andrew Meade
Feb 15, 2018·Evolution; International Journal of Organic Evolution·Isabel S KellerOlivia Roth
Feb 22, 2018·Evolution; International Journal of Organic Evolution·Njal Rollinson, Locke Rowe
Feb 9, 2018·Molecular Ecology·Cloe S Pogoda<