Inferring the historical patterns of biological evolution

Nature
Mark Pagel

Abstract

Phylogenetic trees describe the pattern of descent amongst a group of species. With the rapid accumulation of DNA sequence data, more and more phylogenies are being constructed based upon sequence comparisons. The combination of these phylogenies with powerful new statistical approaches for the analysis of biological evolution is challenging widely held beliefs about the history and evolution of life on Earth.

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Apr 4, 2008·Evolution; International Journal of Organic Evolution·Simone ImmlerTim R Birkhead
May 15, 2007·Ecology Letters·Lauren B Buckley, Walter Jetz
Jul 5, 2006·Evolution; International Journal of Organic Evolution·Brian C O'MearaPeter C Wainwright
Jun 3, 2006·Evolution; International Journal of Organic Evolution·Rachel Collin
Apr 28, 2006·Evolution; International Journal of Organic Evolution·T Jonathan Davies, Vincent Savolainen
Oct 25, 2007·Journal of Evolutionary Biology·Ilia J LeitchMichael F Fay
Nov 3, 2007·Evolution; International Journal of Organic Evolution·Emmanuel Paradis
Mar 14, 2007·Evolution; International Journal of Organic Evolution·Michael P Gillman
Apr 19, 2007·Evolution; International Journal of Organic Evolution·Albert B PhillimoreIan P F Owens
May 1, 2007·Journal of Evolutionary Biology·L Z GaramszegiN Saino
Oct 3, 2007·Evolution; International Journal of Organic Evolution·F Javier Pérez-BarberíaRobin I M Dunbar
Jan 23, 2008·Evolution; International Journal of Organic Evolution·Nils AnthesNico K Michiels
Dec 12, 2007·Evolution; International Journal of Organic Evolution·Oddmund KlevenJan T Lifjeld
Dec 7, 2007·Evolution; International Journal of Organic Evolution·Luke HolmanRhonda R Snook
Mar 29, 2016·PeerJ·Marta Borgi, Bonaventura Majolo
Jan 31, 2009·IEEE/ACM Transactions on Computational Biology and Bioinformatics·Gabriel CardonaGabriel Valiente
Dec 1, 2010·IEEE/ACM Transactions on Computational Biology and Bioinformatics·Tamir Tuller, Elchanan Mossel
Oct 9, 2015·Proceedings. Biological Sciences·Xia Wang, Julia A Clarke
Jan 23, 2016·Systematic Biology·Dirk AhrensAlfried P Vogler
Sep 16, 2015·The ISME Journal·Marta Goberna, Miguel Verdú
Sep 1, 2015·Frontiers in Neuroscience·Douglas R WylieAndrew N Iwaniuk
Aug 28, 2015·Annals of Botany·Marcelo R PaceVeronica Angyalossy
Aug 19, 2015·Frontiers in Neuroanatomy·Jeremy R CorfieldDouglas R Wylie
Jun 27, 2015·Genome Biology and Evolution·Fabian Zimmer, Stephen H Montgomery
Apr 27, 2016·PeerJ·Andrey Rudoy, Ignacio Ribera
Nov 26, 2014·BMC Evolutionary Biology·Takao K SuzukiHideki Sezutsu
Jun 19, 2015·Proceedings. Biological Sciences·Eleanor M CavesClaire N Spottiswoode
Jan 31, 2015·The Journal of Parasitology·Hillary S YoungKristofer M Helgen
Dec 31, 2014·BMC Evolutionary Biology·Kevin J LoopeMichael Juhl
Sep 13, 2014·Science·Luke O FrishkoffGretchen C Daily
Apr 20, 2016·Proceedings of the National Academy of Sciences of the United States of America·Yinhua WangTim F Cooper
Apr 22, 2016·Proceedings. Biological Sciences·Paula Stockley, Liane Hobson
Apr 15, 2015·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·C L NunnJennifer H Fewell
Dec 17, 2014·Molecular Biology and Evolution·Juan C OpazoJay F Storz
Dec 5, 2014·AoB Plants·Ana NovoaDavid M Richardson
Sep 24, 2014·Molecular Biology and Evolution·Jennifer LachowiecChristine Queitsch
Jan 7, 2015·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·T Jonathan Davies
Jan 7, 2015·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·W Jetz, R P Freckleton
Dec 5, 2014·Proceedings. Biological Sciences·Collin M McCabeC L Nunn
Feb 18, 2016·Systematic Biology·Eric H Roalson, Wade R Roberts
Apr 14, 2016·Systematic Biology·Lucas J LegendreJorge Cubo
Jul 16, 2016·BioMed Research International·Juan Wang
Jul 3, 2016·Psychonomic Bulletin & Review·Mark Pagel
Jul 8, 2016·Proceedings. Biological Sciences·Jingchun LiEllen E Strong
Jul 13, 2016·Annals of Botany·Marcelo Reginato, Fabián A Michelangeli
May 17, 2006·Trends in Ecology & Evolution·Mark Pagel
Aug 26, 2016·Oecologia·Bastien CastagneyrolDominique Piou
Aug 23, 2016·Nature Genetics·Martin MalmstrømSissel Jentoft
Sep 9, 2016·Proceedings. Biological Sciences·Joshua P Scholl, John J Wiens
Sep 30, 2016·Nature·José M GómezMarcos Méndez
May 17, 2006·Trends in Ecology & Evolution·Ruth Mace, Clare J Holden
Nov 3, 2016·Heredity·P A MartinezC J Bidau
Jan 5, 2012·Systematic Biology·S P BlombergMary Waterhouse
Aug 2, 2011·Systematic Biology·Damien M de VienneSébastien Ollier
Jan 10, 2012·Systematic Biology·Glenn Litsios, Nicolas Salamin
Oct 19, 2010·Systematic Biology·Alex L PigotC David L Orme
Dec 4, 2015·Proceedings. Biological Sciences·Mark N PuttickPhilip C J Donoghue
Feb 9, 2017·Genome Génome / Conseil National De Recherches Canada·Nicholas W JefferyT Ryan Gregory
Feb 6, 2017·ELife·Thomas BadetSylvain Raffaele
Nov 25, 2016·Scientific Reports·Louise PeckreEmmanuelle Pouydebat
Jan 7, 2016·Scientific Reports·Thodoris ArgyriouMarcelo R Sánchez-Villagra
Mar 25, 2017·Journal of Evolutionary Biology·L M Arenas, M Stevens
Jun 26, 2015·Scientific Reports·Ming KangHongwen Huang
Apr 11, 2017·Evolution; International Journal of Organic Evolution·Luke T DunningP A Christin
Sep 25, 2016·Molecular Phylogenetics and Evolution·Jairo PatiñoAlain Vanderpoorten
Apr 12, 2017·Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution·Takao K Suzuki
Feb 27, 2016·The Journal of Comparative Neurology·Stephen H MontgomerySwidbert R Ott
Aug 27, 2016·Molecular Ecology·Stephen H Montgomery, Judith E Mank
Nov 24, 2016·Ecology and Evolution·Shuang XingBrett R Scheffers
Mar 23, 2017·Evolution; International Journal of Organic Evolution·Patrick ArnoldMartin S Fischer
Apr 14, 2016·Ecology and Evolution·Marta Linde-MedinaRui Diogo
May 12, 2017·The Journal of Animal Ecology·Irene M A BenderMatthias Schleuning
Dec 24, 2016·Journal of Evolutionary Biology·Simon BaeckensW E Cooper
Mar 8, 2005·Research in Microbiology·Mirium KhwajaMilton H Saier
Feb 3, 2009·Trends in Parasitology·Simon Fellous, Lucie Salvaudon
Dec 21, 2014·BMC Evolutionary Biology·Zongji WangQi Zhou
Mar 5, 2014·Ecology Letters·Timothy R BakerOliver L Phillips
Jan 31, 2014·Evolution; International Journal of Organic Evolution·Oliver KrügerFritz Trillmich
Feb 17, 2017·BMC Evolutionary Biology·Rafael Molina-Venegas, Miguel Á Rodríguez
Feb 25, 2017·Journal of Molecular Evolution·Betül KacarEric A Gaucher
Apr 1, 2017·PloS One·Dara N OrbachBernd Würsig
Dec 23, 2016·Nature Communications·Ferran SayolDaniel Sol
Apr 8, 2017·Scientific Reports·Donna Lisa De-SilvaMarianne Elias
Jan 12, 2017·Evolution; International Journal of Organic Evolution·Miriam Leah ZelditchDonald L Swiderski
Nov 24, 2016·Nature·Martin BullaB Kempenaers
Apr 10, 2017·Genome Biology and Evolution·Amy M BoddyDerek E Wildman
Jan 13, 2017·Scientific Reports·Bret A MooreEsteban Fernández-Juricic
Dec 7, 2016·Evolution; International Journal of Organic Evolution·Piotr MiniasPeter O Dunn
Mar 24, 2017·Journal of Human Evolution·Marian DagostoThierry Smith
Feb 25, 2017·PloS One·Miquel Vall-Llosera, Phillip Cassey
Feb 9, 2017·Evolution; International Journal of Organic Evolution·Allison J Shultz, Kevin J Burns
Mar 21, 2017·Journal of Human Evolution·Thomas R ReinKaterina Harvati
Nov 25, 2016·Evolution; International Journal of Organic Evolution·Kobe MartinTracey L Rogers
May 26, 2017·Genome Biology and Evolution·Sarah Sander LowerDavid Hall
Mar 16, 2017·Molecular Phylogenetics and Evolution·Thomas Marcussen, Andrea S Meseguer
Jan 20, 2017·Proceedings. Biological Sciences·Martha M MuñozS N Patek
Jun 9, 2017·Systematic Biology·Florent MazelMatthew W Pennell
Jun 29, 2016·Biological Reviews of the Cambridge Philosophical Society·Sara ManafzadehElena Conti
Apr 13, 2017·Journal of Morphology·Claudia Olivera-TlahuelJ Jaime Zúñiga-Vega
Jun 29, 2017·Molecular Biology and Evolution·Gigi Y LauJeffrey G Richards
May 10, 2017·Current Biology : CB·Will Cornwell, S Nakagawa
Feb 15, 2018·Evolution; International Journal of Organic Evolution·Isabel S KellerOlivia Roth
Feb 22, 2018·Evolution; International Journal of Organic Evolution·Njal Rollinson, Locke Rowe