Interacting Proteins, Polymorphisms and the Susceptibility of Animals to SARS-CoV-2.

Animals : an Open Access Journal From MDPI
John T HancockAlexander Greenhough

Abstract

COVID-19, caused by SARS-CoV-2, is a world-wide problem for the human population. It is known that some animal species, such as mink, can become infected and transmit the virus. However, the susceptibility of most animals is not known. Here, we review the use of sequence analysis of the proteins which are known to interact with SARS-CoV-2 as a way to estimate an animal's susceptibility. Although most such work concentrates on the angiotensin-converting enzyme 2 receptor (ACE2), here TMPRSS2 (Transmembrane Serine Protease 2), neuropilin-1 and furin are also considered. Polymorphisms, especially ones which are known to alter viral/host interactions are also discussed. Analysis of ACE2 and TMPRSS2 protein sequences across species suggests this approach may be of some utility in predicting susceptibility; however, this analysis fails to highlight some susceptible animals such as mink. However, combined with observational data which emerges over time about which animals actually become infected, this may, in the future, be a useful tool to assist the management of risks associated with human/animal contact and support conservation and animal welfare measures.

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Citations

Aug 8, 2021·Animals : an Open Access Journal From MDPI·Kimberly EkstrandKathleen N Morgan

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Software Mentioned

HHalign
BlastP
Clustal Omega
gnomAD
ACE2

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