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Interactive analysis and quality assessment of single-cell copy-number variations

bioRxiv

Nov 12, 2014

Tyler GarvinMichael C. Schatz

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Abstract

We present an open-source visual-analytics web platform, Ginkgo (http://qb.cshl.edu/ginkgo), for the interactive analysis and quality assessment of single-cell copy-number alterations. Ginkgo automatically constructs copy-number profiles of individual cells from mapped reads, as well as...read more

Mentioned in this Paper

Comparative Analysis
Polymerase Chain Reaction
Study
Array
Evaluation
DNA Amplification
Contingent Negative Variation
Cell Count
DOP-3 protein, C elegans
Ginkgo Genus
18
11
Paper Details
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  • Interactive analysis and quality assessment of single-cell copy-number variations

    bioRxiv

    Nov 12, 2014

    Tyler GarvinMichael C. Schatz

    PMID: 990011346

    DOI: 10.1101/011346

    Abstract

    We present an open-source visual-analytics web platform, Ginkgo (http://qb.cshl.edu/ginkgo), for the interactive analysis and quality assessment of single-cell copy-number alterations. Ginkgo automatically constructs copy-number profiles of individual cells from mapped reads, as well as...read more

    Mentioned in this Paper

    Comparative Analysis
    Polymerase Chain Reaction
    Study
    Array
    Evaluation
    18
    11
    Paper Details
    References
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