Mar 25, 2020

Mechanism of action of HBV capsid assembly modulators predicted from binding to early assembly intermediates

BioRxiv : the Preprint Server for Biology
A. PavlovaJames C. Gumbart

Abstract

Interfering with the self-assembly of virus nucleocapsids is a promising approach for the development of novel antiviral agents. Applied to hepatitis B virus (HBV), this approach has led to several classes of capsid assembly modulators (CAMs) that target the virus by either accelerating nucleocapsid assembly or misdirecting it into non-capsid-like particles. Here, we have assessed the structures of early nucleocapsid assembly intermediates, with and without bound CAMs, using molecular dynamics simulations. We find that distinct conformations of the intermediates are induced depending on whether the bound CAM accelerates or misdirects assembly; these structures are predictive of the final assembly. We also selected non-capsid-like structures from our simulations for virtual screening, resulting in the discovery of several compounds with moderate anti-viral activity and low toxicity. Cryo-electron microscopy and capsid melting experiments suggest that our compounds possess a novel mechanism for assembly modulation, potentially opening new avenues for HBV inhibition.

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Mentioned in this Paper

Gracilaria bursa-pastoris
Genome
Bone Cysts, Aneurysmal
Complex (molecular entity)
Face
Capsella Preparation
Karyotype
Genetic Pedigree
Triportheus paranensis
Capsella

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