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KmerStream: Streaming algorithms for k-mer abundance estimation

bioRxiv

Apr 7, 2014

Páll Melsted, Bjarni V Halldórsson

Abstract

Motivation: Several applications in bioinformatics, such as genome assemblers and error corrections methods, rely on counting and keeping track of k-mers (substrings of length k). Histograms of k-mer frequencies can give valuable insight into the underlying distribution and indicate the...read more

Mentioned in this Paper

Sequencing
Anatomical Space Structure
Motivation
Software Tools
High-Throughput RNA Sequencing
Sampling - Surgical Action
Size
GPER protein, human
Research Study
Cocaine
40
19
Paper Details
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KmerStream: Streaming algorithms for k-mer abundance estimation

bioRxiv

Apr 7, 2014

Páll Melsted, Bjarni V Halldórsson

PMID: 990003962

DOI: 10.1101/003962

Abstract

Motivation: Several applications in bioinformatics, such as genome assemblers and error corrections methods, rely on counting and keeping track of k-mers (substrings of length k). Histograms of k-mer frequencies can give valuable insight into the underlying distribution and indicate the...read more

Mentioned in this Paper

Sequencing
Anatomical Space Structure
Motivation
Software Tools
High-Throughput RNA Sequencing
Sampling - Surgical Action
Size
GPER protein, human
Research Study
Cocaine
40
19

Similar Papers Found In These Feeds

Paper Details
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    References currently unavailable

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