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KmerStream: Streaming algorithms for k-mer abundance estimation

bioRxiv

Apr 7, 2014

Páll Melsted, Bjarni V. Halldórsson

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Abstract

Motivation: Several applications in bioinformatics, such as genome assemblers and error corrections methods, rely on counting and keeping track of k-mers (substrings of length k). Histograms of k-mer frequencies can give valuable insight into the underlying distribution and indicate the...read more

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Sampling - Surgical Action
Genome
Severe Acute Respiratory Syndrome
Bio-Informatics
Cocaine
Motivation
Software Tools
High-Throughput RNA Sequencing
Research Study
Size
39
1
Paper Details
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  • KmerStream: Streaming algorithms for k-mer abundance estimation

    bioRxiv

    Apr 7, 2014

    Páll Melsted, Bjarni V. Halldórsson

    PMID: 990003962

    DOI: 10.1101/003962

    Abstract

    Motivation: Several applications in bioinformatics, such as genome assemblers and error corrections methods, rely on counting and keeping track of k-mers (substrings of length k). Histograms of k-mer frequencies can give valuable insight into the underlying distribution and indicate the...read more

    Mentioned in this Paper

    Sampling - Surgical Action
    Genome
    Severe Acute Respiratory Syndrome
    Bio-Informatics
    Cocaine
    39
    1
    Paper Details
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