LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors

Bioinformatics
Keiichi MochidaLam-Son Phan Tran

Abstract

We have established a database named LegumeTFDB to provide access to transcription factor (TF) repertoires of three major legume species: soybean (Glycine max), Lotus japonicus and Medicago truncatula. LegumeTFDB integrates unique information for each TF gene and family, including sequence features, gene promoters, domain alignments, gene ontology (GO) assignment and sequence comparison data derived from comparative analysis with TFs found within legumes, in Arabidopsis, rice and poplar as well as with proteins in NCBI nr and UniProt. We also analyzed the promoter regions for all of the TFs to identify all types of cis-motifs provided by the PLACE database. Additionally, we supply hyperlinks to make available expression data of 2411 soybean TF genes. LegumeTFDB provides an important user-friendly public resource for comparative genomics and understanding of transcriptional regulation in agriculturally important legumes. http://legumetfdb.psc.riken.jp/. Supplementary data available at Bioinformatics online.

References

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Nov 4, 2009·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Keiichi MochidaLam-Son Phan Tran

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Citations

May 24, 2012·Proceedings of the National Academy of Sciences of the United States of America·Zhengjun XiaKyuya Harada
Jun 21, 2011·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Dung Tien LeLam-Son Phan Tran
Jul 7, 2011·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Keiichi MochidaLam-Son Phan Tran
Jan 4, 2013·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Keiichi MochidaLam-Son Phan Tran
May 2, 2013·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Alice KujurSwarup K Parida
Jul 3, 2013·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Chien Van HaLam-Son Phan Tran
Mar 9, 2010·Plant & Cell Physiology·Keiichi Mochida, Kazuo Shinozaki
Nov 10, 2013·Plant & Cell Physiology·Keiichi Mochida, Kazuo Shinozaki
Jul 18, 2012·Genetics and Molecular Biology·Anna Cristina Neves-BorgesMárcio Alves-Ferreira
Jul 18, 2012·Genetics and Molecular Biology·Nina M Soares-CavalcantiAna M Benko-Iseppon
Jun 29, 2010·Functional & Integrative Genomics·Lam-Son Phan Tran, Keiichi Mochida
Dec 14, 2011·Plant & Cell Physiology·Keiichi Mochida, Kazuo Shinozaki
Dec 21, 2011·Critical Reviews in Biotechnology·Nguyen Phuong Thao, Lam-Son Phan Tran
Dec 30, 2014·Molecular Genetics and Genomics : MGG·Truyen N QuachHenry T Nguyen
Dec 7, 2013·TheScientificWorldJournal·Zhengjun XiaYupeng Zhang
Mar 27, 2012·Trends in Plant Science·Swati PuranikManoj Prasad
Oct 21, 2016·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Vijay GahlautPushpendra Kumar Gupta
Oct 25, 2016·The Plant Journal : for Cell and Molecular Biology·Keiichi MochidaKazuki Saito
Mar 6, 2013·International Journal of Molecular Sciences·Saad SuliemanLam-Son Phan Tran
Apr 23, 2019·Omics : a Journal of Integrative Biology·Pratigya SubbaThottethodi Subrahmanya Keshava Prasad
Apr 13, 2020·Journal of Experimental Botany·Serena VarottoDragana Miladinović

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