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Lighter: fast and memory-efficient error correction without counting

bioRxiv

May 27, 2014

Li SongBen Regina Langmead

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Abstract

Lighter is a fast, memory-efficient tool for correcting sequencing errors. Lighter avoids counting k-mers. Instead, it uses a pair of Bloom filters, one holding a sample of the input k-mers and the other holding k-mers likely to be correct. As long as the sampling fraction is adjusted i...read more

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Computer Software
Severe Acute Respiratory Syndrome
High-Throughput RNA Sequencing
Size
Nucleic Acid Sequencing
Filter - Medical Device
Sequencing
20
Paper Details
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  • Lighter: fast and memory-efficient error correction without counting

    bioRxiv

    May 27, 2014

    Li SongBen Regina Langmead

    PMID: 990005579

    DOI: 10.1101/005579

    Abstract

    Lighter is a fast, memory-efficient tool for correcting sequencing errors. Lighter avoids counting k-mers. Instead, it uses a pair of Bloom filters, one holding a sample of the input k-mers and the other holding k-mers likely to be correct. As long as the sampling fraction is adjusted i...read more

    Mentioned in this Paper

    Computer Software
    Severe Acute Respiratory Syndrome
    High-Throughput RNA Sequencing
    Size
    Nucleic Acid Sequencing
    20
    Paper Details
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