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Lighter: fast and memory-efficient error correction without counting

bioRxiv

May 27, 2014

Li SongBen Langmead

Abstract

Lighter is a fast and memory-efficient tool for correcting sequencing errors in high-throughput sequencing datasets. Lighter avoids counting k -mers in the sequencing reads. Instead, it uses a pair of Bloom filters, one populated with a sample of the input k -mers and the other populate...read more

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Sequencing
Filter - Medical Device
Computer Software
High-Throughput RNA Sequencing
Size
Severe Acute Respiratory Syndrome
Nucleic Acid Sequencing
21
26
Paper Details
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Lighter: fast and memory-efficient error correction without counting

bioRxiv

May 27, 2014

Li SongBen Langmead

PMID: 990005579

DOI: 10.1101/005579

Abstract

Lighter is a fast and memory-efficient tool for correcting sequencing errors in high-throughput sequencing datasets. Lighter avoids counting k -mers in the sequencing reads. Instead, it uses a pair of Bloom filters, one populated with a sample of the input k -mers and the other populate...read more

Mentioned in this Paper

Sequencing
Filter - Medical Device
Computer Software
High-Throughput RNA Sequencing
Size
Severe Acute Respiratory Syndrome
Nucleic Acid Sequencing
21
26
Paper Details
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  • Citations
  • finger pointing at paper

    References currently unavailable

    We're still populating references for this paper, please check back later.
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