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Lighter: fast and memory-efficient error correction without counting
bioRxiv
May 27, 2014
Li SongBen Regina Langmead
PMID: 990005579
DOI: 10.1101/005579
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Abstract
Lighter is a fast, memory-efficient tool for correcting sequencing errors. Lighter avoids counting k-mers. Instead, it uses a pair of Bloom filters, one holding a sample of the input k-mers and the other holding k-mers likely to be correct. As long as the sampling fraction is adjusted i...read more
Mentioned in this Paper
Computer Software
Severe Acute Respiratory Syndrome
High-Throughput RNA Sequencing
Size
Nucleic Acid Sequencing
Filter - Medical Device
Sequencing
20
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Lighter: fast and memory-efficient error correction without counting
Abstract
Lighter is a fast, memory-efficient tool for correcting sequencing errors. Lighter avoids counting k-mers. Instead, it uses a pair of Bloom filters, one holding a sample of the input k-mers and the other holding k-mers likely to be correct. As long as the sampling fraction is adjusted i...read more
Mentioned in this Paper
Computer Software
Severe Acute Respiratory Syndrome
High-Throughput RNA Sequencing
Size
Nucleic Acid Sequencing
20
Paper Details
References
- References
- Citations
References currently unavailable
We're still populating references for this paper, please check back later.
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