Looking back on a decade of barcoding crustaceans

ZooKeys
Michael J Raupach, Adriana Radulovici

Abstract

Species identification represents a pivotal component for large-scale biodiversity studies and conservation planning but represents a challenge for many taxa when using morphological traits only. Consequently, alternative identification methods based on molecular markers have been proposed. In this context, DNA barcoding has become a popular and accepted method for the identification of unknown animals across all life stages by comparison to a reference library. In this review we examine the progress of barcoding studies for the Crustacea using the Web of Science data base from 2003 to 2014. All references were classified in terms of taxonomy covered, subject area (identification/library, genetic variability, species descriptions, phylogenetics, methods, pseudogenes/numts), habitat, geographical area, authors, journals, citations, and the use of the Barcode of Life Data Systems (BOLD). Our analysis revealed a total number of 164 barcoding studies for crustaceans with a preference for malacostracan crustaceans, in particular Decapoda, and for building reference libraries in order to identify organisms. So far, BOLD did not establish itself as a popular informatics platform among carcinologists although it offers many advantages ...Continue Reading

References

May 30, 1991·Nature·R R OlsonT D Kocher
Feb 1, 1997·Molecular Biology and Evolution·R Schneider-Broussard, J E Neigel
May 23, 2001·Trends in Ecology & Evolution·D BensassonG M. Hewitt
Jul 27, 2001·Molecular Biology and Evolution·S T Williams, N Knowlton
Nov 28, 2002·Molecular Ecology·T L ShearerG Wörheide
Mar 5, 2003·Proceedings. Biological Sciences·Paul D N HebertJeremy R deWaard
Sep 4, 2003·Proceedings. Biological Sciences·Paul D N HebertJeremy R deWaard
Mar 12, 2004·Molecular Ecology·J William O Ballard, Michael C Whitlock
Oct 7, 2004·Proceedings of the National Academy of Sciences of the United States of America·Paul D N HebertWinnie Hallwachs
Oct 11, 2005·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Rob DeSalleMark Siddall
Oct 26, 2005·Systematic Biology·Kipling W WillQuentin D Wheeler
Jul 19, 2006·Proceedings. Biological Sciences·Paul Barber, Sarah L Boyce
Oct 25, 2006·Systematic Biology·Stephen CameronKipling Will
Dec 7, 2006·Biology Letters·Timothy J PageJane M Hughes
Mar 27, 2007·Molecular Biology and Evolution·Pekka PamiloAnu Vihavainen
Sep 2, 2008·Proceedings of the National Academy of Sciences of the United States of America·Hojun SongKeith A Crandall
Sep 12, 2008·Molecular Ecology Notes·Sujeevan Ratnasingham, Paul D N Hebert
Dec 23, 2008·Trends in Ecology & Evolution·Alice ValentiniPierre Taberlet
Mar 10, 2009·Zoological Science·Frederic SinnigerJan Pawlowski
Aug 6, 2009·Molecular Phylogenetics and Evolution·L KrebesR Bastrop
Sep 10, 2009·Annual Review of Entomology·Birgit C Schlick-SteinerRoss H Crozier
Sep 17, 2009·Molecular Phylogenetics and Evolution·M J HickersonA D Yoder
Feb 20, 2010·PLoS Genetics·Einat Hazkani-CovoWilliam Martin
May 27, 2010·Frontiers in Zoology·José M PadialMiguel Vences
Oct 29, 2010·Nature Communications·Vera G FonsecaSimon Creer
Dec 25, 2010·BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology·Paul Z Goldstein, Rob DeSalle
Feb 2, 2011·Molecular Phylogenetics and Evolution·Leocadio Blanco-BercialAnn Bucklin
Feb 19, 2011·Annual Review of Marine Science·Ann BucklinLeocadio Blanco-Bercial
Mar 25, 2011·Molecular Ecology Resources·Catherine S McFaddenScott C France
Mar 1, 2008·Molecular Ecology Resources·T L Shearer, M A Coffroth
Dec 6, 2011·Molecular Phylogenetics and Evolution·Víctor Hugo García-MerchánMarta Pascual
Dec 14, 2011·Molecular Ecology·Philip Francis ThomsenEske Willerslev
Feb 24, 2012·Molecular Ecology Resources·H R Taylor, W E Harris
Mar 9, 2012·Systematic Biology·Johannes BergstenAlfried P Vogler
Apr 11, 2012·Molecular Ecology·Shadi ShokrallaMehrdad Hajibabaei
Jun 12, 2012·Methods in Molecular Biology·Natalia V IvanovaAlex V Borisenko

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Citations

Dec 28, 2016·Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis·Timothy J Page, Dirk Steinke
Mar 25, 2017·Genome Génome / Conseil National De Recherches Canada·B S BezengM van der Bank
Oct 2, 2017·Neotropical Entomology·J- D WangR Wang
May 24, 2018·PloS One·Astrid TempestiniFrance Dufresne
Sep 6, 2017·Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis·Fernando L MantelattoMayara J Miyazaki
Aug 23, 2019·Molecular Ecology Resources·Peter ShumStephen R Palumbi
Jan 23, 2020·Biodiversity Data Journal·Dagoberto E Venera-PontónRachel Collin
Apr 20, 2018·Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis·Lei XuFeiyan Du

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Software Mentioned

BOLD
WoS
PLOS ONE
QGIS
DS
Barcode Index Number ( BIN )
crusta
CRST
BOLD Workbench

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