Making genome browsers portable and personal

Genome Biology
Aziz Khan, Xuegong Zhang

Abstract

GIVE is a framework and library for creating portable and personalized genome browsers. It makes visualizing genomic data as easy as building a laboratory homepage.

References

Dec 26, 2001·Nucleic Acids Research·T HubbardM Clamp
Jun 5, 2002·Genome Research·W James KentDavid Haussler
Jul 6, 2012·Briefings in Bioinformatics·Jun WangJingchu Luo
Jul 19, 2018·Genome Biology·Xiaoyi CaoSheng Zhong

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Methods Mentioned

BETA
immunoprecipitation
Hi-C
ChIP-seq

Software Mentioned

HUG
BigWig
- Toolbox
Google map
GIVE HUG
Oak
Pine
GIVE ( genomic interaction visualization engine
GIVE
Ensembl

Related Concepts

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CZI Human Cell Atlas Seed Network

The aim of the Human Cell Atlas (HCA) is to build reference maps of all human cells in order to enhance our understanding of health and disease. The Seed Networks for the HCA project aims to bring together collaborators with different areas of expertise in order to facilitate the development of the HCA. Find the latest research from members of the HCA Seed Networks here.

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