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Mash Screen: high-throughput sequence containment estimation for genome discovery

Genome Biology

Nov 7, 2019

Brian D OndovAdam M Phillippy

Abstract

The MinHash algorithm has proven effective for rapidly estimating the resemblance of two genomes or metagenomes. However, this method cannot reliably estimate the containment of a genome within a metagenome. Here, we describe an online algorithm capable of measuring the containment of g...read more

Mentioned in this Paper

Steroid receptor RNA activator
Genome
Metagenome
Ncbi Taxonomy
Proteome
Screening Generic
Species
Retrospective Studies
Polyomavirus
Drug Discovery
132
55
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Mash Screen: high-throughput sequence containment estimation for genome discovery

Genome Biology

Nov 7, 2019

Brian D OndovAdam M Phillippy

PMID: 31690338

DOI: 10.1186/s13059-019-1841-x

Abstract

The MinHash algorithm has proven effective for rapidly estimating the resemblance of two genomes or metagenomes. However, this method cannot reliably estimate the containment of a genome within a metagenome. Here, we describe an online algorithm capable of measuring the containment of g...read more

Mentioned in this Paper

Steroid receptor RNA activator
Genome
Metagenome
Ncbi Taxonomy
Proteome
Screening Generic
Species
Retrospective Studies
Polyomavirus
Drug Discovery
132
55

Similar Papers Found In These Feeds

Paper Details
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