MassBank: a public repository for sharing mass spectral data for life sciences

Journal of Mass Spectrometry : JMS
Hisayuki HoraiTakaaki Nishioka

Abstract

MassBank is the first public repository of mass spectra of small chemical compounds for life sciences (<3000 Da). The database contains 605 electron-ionization mass spectrometry (EI-MS), 137 fast atom bombardment MS and 9276 electrospray ionization (ESI)-MS(n) data of 2337 authentic compounds of metabolites, 11 545 EI-MS and 834 other-MS data of 10,286 volatile natural and synthetic compounds, and 3045 ESI-MS(2) data of 679 synthetic drugs contributed by 16 research groups (January 2010). ESI-MS(2) data were analyzed under nonstandardized, independent experimental conditions. MassBank is a distributed database. Each research group provides data from its own MassBank data servers distributed on the Internet. MassBank users can access either all of the MassBank data or a subset of the data by specifying one or more experimental conditions. In a spectral search to retrieve mass spectra similar to a query mass spectrum, the similarity score is calculated by a weighted cosine correlation in which weighting exponents on peak intensity and the mass-to-charge ratio are optimized to the ESI-MS(2) data. MassBank also provides a merged spectrum for each compound prepared by merging the analyzed ESI-MS(2) data on an identical compound unde...Continue Reading

References

Nov 22, 1980·Lancet
Dec 17, 2004·Nature·Christopher M Dobson
Dec 17, 2004·Nature·Jon Clardy, Christopher Walsh
Dec 23, 2004·Bioinformatics·Joachim KopkaDirk Steinhauser
Feb 22, 2005·Journal of Lipid Research·Eoin FahyEdward A Dennis
Jan 13, 2006·Therapeutic Drug Monitoring·Colin A SmithGary Siuzdak
May 2, 2007·Mass Spectrometry Reviews·Liam A McDonnell, Ron M A Heeren
Aug 10, 2007·Nature Biotechnology·Susanna-Assunta SansoneOliver Fiehn
Dec 7, 2007·Rapid Communications in Mass Spectrometry : RCM·Katerina VolnáMartin Hubálek
May 10, 2008·Nucleic Acids Research·Richard G CôtéHenning Hermjakob
Oct 23, 2008·The Plant Journal : for Cell and Molecular Biology·Fumio MatsudaKazuki Saito
Oct 28, 2008·Nucleic Acids Research·David S WishartIan Forsythe
Aug 12, 2009·Analytical Sciences : the International Journal of the Japan Society for Analytical Chemistry·Tsutomu Masujima
Sep 11, 2009·Nature·Paul N SchofieldUNKNOWN CASIMIR Rome Meeting participants
Nov 3, 2009·Nucleic Acids Research·Minoru KanehisaMika Hirakawa
Sep 1, 2007·Metabolomics : Official Journal of the Metabolomic Society·Lloyd W SumnerMark R Viant
Sep 1, 1994·Journal of the American Society for Mass Spectrometry·S E Stein, D R Scott

❮ Previous
Next ❯

Citations

May 21, 2013·Archives of Toxicology·Márcia Sá MonteiroMárcia Carvalho
Oct 12, 2010·Analytical and Bioanalytical Chemistry·Steffen Neumann, Sebastian Böcker
Apr 6, 2012·Analytical and Bioanalytical Chemistry·Marco Zedda, Christian Zwiener
Mar 28, 2013·Analytical and Bioanalytical Chemistry·Ryo Nakabayashi, Kazuki Saito
Feb 22, 2012·Journal of the American Society for Mass Spectrometry·Daniel G Beach, Wojciech Gabryelski
Jan 25, 2013·Journal of the American Society for Mass Spectrometry·Bjorn J A BerendsenMichel W F Nielen
Dec 23, 2010·Analytical Chemistry·Ralf TautenhahnGary Siuzdak
Aug 14, 2012·Journal of Agricultural and Food Chemistry·Daniel CuthbertsonB Markus Lange
Sep 13, 2013·Journal of Natural Products·Jane Y YangPieter C Dorrestein
Sep 12, 2012·Nature Biotechnology·Ralf TautenhahnGary Siuzdak
Aug 31, 2011·Proceedings of the National Academy of Sciences of the United States of America·Kevin G RoelofsVincent T Lee
May 16, 2012·Proceedings of the National Academy of Sciences of the United States of America·Jeramie WatrousPieter C Dorrestein
Aug 24, 2013·Proceedings of the National Academy of Sciences of the United States of America·Cheng-Chih HsuPieter C Dorrestein
Jul 6, 2012·Briefings in Bioinformatics·Jürgen HartlerGerhard G Thallinger
Jun 13, 2012·Bioinformatics·Franziska HufskySebastian Böcker
Dec 6, 2011·Nucleic Acids Research·Masahiro SugimotoTomoyoshi Soga
May 31, 2011·Nucleic Acids Research·Manor Askenazi, Michal Linial
Nov 9, 2011·Nucleic Acids Research·Timothy JewisonDavid S Wishart
Nov 20, 2012·Nucleic Acids Research·David S WishartAugustin Scalbert
Oct 31, 2012·Nucleic Acids Research·An Chi GuoDavid S Wishart
Sep 29, 2011·Plant Physiology·Takayuki TohgeAlisdair R Fernie
Jul 24, 2012·Journal of Bacteriology·Jane Y YangPieter C Dorrestein
Mar 8, 2013·PloS One·Miaoqing ShenOwen A Hoekenga
Dec 14, 2011·Marine Drugs·Dioli Ann PayoOlivier de Clerck
Sep 18, 2012·Advances in Nutrition·Sridhar A MalkaramJanos Zempleni
Nov 16, 2013·Analytical and Bioanalytical Chemistry·Toshihiro KobayashiMasahiro Kohno
Feb 8, 2014·Journal of Pharmaceutical and Biomedical Analysis·Miranda G M KokGerhardus J de Jong

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.

Related Papers

Therapeutic Drug Monitoring
Colin A SmithG Siuzdak
Nucleic Acids Research
David S WishartIan Forsythe
The Plant Journal : for Cell and Molecular Biology
Fumio MatsudaKazuki Saito
Nucleic Acids Research
David S WishartLori Querengesser
© 2021 Meta ULC. All rights reserved