Oct 25, 2018

Measuring mobility in chromatin by intensity sorted FCS

BioRxiv : the Preprint Server for Biology
Melody Di BonaLuca Lanzanò

Abstract

The architectural organization of chromatin can play an important role in genome regulation by affecting the mobility of molecules within its surroundings via binding interactions and molecular crowding. The diffusion of molecules at specific locations in the nucleus can be studied by Fluorescence Correlation Spectroscopy (FCS), a well-established technique based on the analysis of fluorescence intensity fluctuations detected in a confocal observation volume. However, detecting subtle variations of mobility between different chromatin regions remains challenging with currently-available FCS methods. Here we introduce a method that samples multiple positions by slowly scanning the FCS observation volume across the nucleus. Analyzing the data in short time segments, we preserve the high temporal resolution of single-point FCS while probing different nuclear regions in the same cell. Using the intensity level of the probe (or a DNA marker) as a reference, we efficiently sort the FCS segments into different populations and obtain average correlation functions that are associated to different chromatin regions. This sorting and averaging strategy renders the method statistically robust while preserving the observation of intranuclea...Continue Reading

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Mentioned in this Paper

PRL
Fluorescent Dyes
Fluctuation
Biological Neural Networks
Exploration With a Probe
Genome
Estrogen receptor alpha, human
Regulation of Biological Process
Osmolarity Measurement
Tooth Crowding

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