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MEME SUITE: tools for motif discovery and searching

Nucleic Acids Research

May 22, 2009

Timothy L BaileyWilliam Stafford Noble

Abstract

The MEME Suite web server provides a unified portal for online discovery and analysis of sequence motifs representing features such as DNA binding sites and protein interaction domains. The popular MEME motif discovery algorithm is now complemented by the GLAM2 algorithm which allows di...read more

Mentioned in this Paper

Twitter Messaging
Hypertension, Portal
Computer Programs and Programming
Protein-Protein Interaction
Regulatory Elements, Transcriptional
Sequence Determinations, DNA
Protein Domain
SPG21 gene
Protein Sequence Databases
Transcription Factor
2
2289
Paper Details
References
  • References10
  • Citations1804
1
  • References10
  • Citations1804
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MEME SUITE: tools for motif discovery and searching

Nucleic Acids Research

May 22, 2009

Timothy L BaileyWilliam Stafford Noble

PMID: 19458158

DOI: 10.1093/nar/gkp335

Abstract

The MEME Suite web server provides a unified portal for online discovery and analysis of sequence motifs representing features such as DNA binding sites and protein interaction domains. The popular MEME motif discovery algorithm is now complemented by the GLAM2 algorithm which allows di...read more

Mentioned in this Paper

Twitter Messaging
Hypertension, Portal
Computer Programs and Programming
Protein-Protein Interaction
Regulatory Elements, Transcriptional
Sequence Determinations, DNA
Protein Domain
SPG21 gene
Protein Sequence Databases
Transcription Factor
2
2289

Feeds With Similar Papers

Cis- & Trans-Regulatory Elements

Cis-regulatory elements are DNA regions that regulate the transcription of neighbouring genes. Trans-regulatory elements are genomic loci that regulate the expression of distant genes by encoding transcription factors. Here is the latest research on CREs and TREs.

Transcription: Protein Domains (Keystone)

Transcription factors are proteins with domains that bind to the DNA of promoter or enhancer regions of specific genes. They also have a domain that interacts with RNA polymerase II or other transcription factors and consequently regulates the amount of messenger RNA (mRNA) produced by the gene.This feed focuses on protein domains that affect gene regulation.

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Genome Biology

Model-based analysis of ChIP-Seq (MACS)

Genome BiologySeptember 19, 2008
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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Genome BiologyMarch 6, 2009
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Paper Details
References
  • References10
  • Citations1804
1
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12345...

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