Metabolome variability in crop plant species--when, where, how much and so what?

Regulatory Toxicology and Pharmacology : RTP
Howard V DaviesKarl-Heinz Engel

Abstract

"Omics" technologies provide coverage of gene, protein and metabolite analysis that is unsurpassed compared with traditional targeted approaches. There are a growing number of examples indicating that profiling approaches can be used to expose significant sources of variation in the composition of crop and model plants caused by genetic background, breeding method, growing environment (site, season), genotype × environment interactions and crop cultural practices to name but a few. Whilst breeders have long been aware of such variation from tried and tested targeted analytical approaches, the broad-scale, so called "unbiased" analysis of the metabolome now possible, offers a major upside to our understanding of the true extent of variation in a plethora of metabolites relevant to human and animal health and nutrition. Metabolomics is helping to provide targets for plant breeding by linking gene expression, and allelic variation to variation in metabolite complement (functional genomics), and is also being deployed to better assess the potential impacts of climate change and reduced input agricultural systems on crop composition. This review will provide examples of the factors driving variation in the metabolomes of crop species.

References

Feb 19, 2003·Phytochemistry·Richard A Dixon, Dieter Strack
Mar 26, 2003·Annals of Nutrition & Metabolism·M MinoggioP G Pietta
Jul 10, 2003·Journal of Agricultural and Food Chemistry·Shiow Y WangJ L Maas
Sep 30, 2004·Journal of Agricultural and Food Chemistry·Marianne DefernezIan J Colquhoun
May 28, 2005·The Plant Journal : for Cell and Molecular Biology·Jinrui ShiTeresa Harp
Jun 23, 2005·Journal of Agricultural and Food Chemistry·Adrian J ParrHoward V Davies
Jun 28, 2005·Phytochemistry·Jess D ReedMartha M Vestling
Sep 13, 2005·Phytochemistry·De-Yu Xie, Richard A Dixon
Sep 28, 2005·Proceedings of the National Academy of Sciences of the United States of America·Gareth S CatchpoleJohn Draper
Dec 22, 2005·Journal of Agricultural and Food Chemistry·Tracey L ReynoldsJames D Astwood
Jan 18, 2006·The New Phytologist·Robert D Hall
Feb 17, 2006·Current Opinion in Plant Biology·Alisdair R FernieDani Zamir
Sep 5, 2006·Trends in Plant Science·Nicolas Schauer, Alisdair R Fernie
Dec 21, 2006·Plant Biotechnology Journal·John M BakerMichael H Beale
Mar 17, 2007·Journal of Agricultural and Food Chemistry·William MullenAlan Crozier
May 12, 2007·Molecular Nutrition & Food Research·Derek StewartInger Martinussen
Jul 5, 2007·Journal of Agricultural and Food Chemistry·George G HarriganKevin C Glenn
Aug 19, 2007·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Feng-Jie YuanQing-Yao Shu
Oct 2, 2007·Analytical Biochemistry·Cecilia Castro, Cesare Manetti
Dec 7, 2007·Journal of Agricultural and Food Chemistry·Thomas FrankKarl-Heinz Engel
Jul 25, 2008·Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences·Gordon McDougallDerek Stewart
Oct 22, 2008·Journal of Agricultural and Food Chemistry·Gary DobsonDerek Stewart
Jul 16, 2009·Journal of Agricultural and Food Chemistry·Thomas FrankKarl-Heinz Engel
Sep 29, 2009·Journal of Plant Physiology·Benoît BiaisAnnick Moing

❮ Previous
Next ❯

Citations

Aug 14, 2012·Cellular and Molecular Life Sciences : CMLS·Toshihiro Obata, Alisdair R Fernie
Oct 1, 2014·Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry·Ga Ryun KimChoong Hwan Lee
Apr 3, 2012·Trends in Plant Science·Alisdair R FernieChris Bowler
Jun 1, 2011·Environment International·Jack A HeinemannDavid Quist
Jun 29, 2010·Regulatory Toxicology and Pharmacology : RTP·Bruce M Chassy
Apr 16, 2013·Physiologia Plantarum·Ron Mittler, Vladimir Shulaev
Jan 16, 2014·Journal of the Science of Food and Agriculture·Anja BonteKarsten Niehaus
Jun 20, 2014·Regulatory Toxicology and Pharmacology : RTP·Gregory S LadicsJason M Ward
Dec 30, 2014·Frontiers in Plant Science·Sushma NaithaniPankaj Jaiswal
Jul 8, 2014·Frontiers in Plant Science·Erik AlexanderssonErik Andreasson
Feb 22, 2017·Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry·Yun Ji ParkSang Un Park
Feb 1, 2014·Journal of Agricultural and Food Chemistry·Hamid BaniasadiVincent Asiago
Dec 8, 2017·International Journal of Molecular Sciences·Shirlley F M da LuzJoyce Kelly do R da Silva
Jan 28, 2017·BioMed Research International·Roel C RabaraPaul J Rushton
Mar 2, 2012·Journal of Agricultural and Food Chemistry·Thomas FrankKarl-Heinz Engel

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.