Microecological Koch's postulates reveal that intestinal microbiota dysbiosis contributes to shrimp white feces syndrome

Microbiome
Zhijian HuangJianguo He

Abstract

Recently, increasing evidence supports that some complex diseases are not attributed to a given pathogen, but dysbiosis in the host intestinal microbiota (IM). The full intestinal ecosystem alterations, rather than a single pathogen, are associated with white feces syndrome (WFS), a globally severe non-infectious shrimp disease, while no experimental evidence to explore the causality. Herein, we conducted comprehensive metagenomic and metabolomic analysis, and intestinal microbiota transplantation (IMT) to investigate the causal relationship between IM dysbiosis and WFS. Compared to the Control shrimp, we found dramatically decreased microbial richness and diversity in WFS shrimp. Ten genera, such as Vibrio, Candidatus Bacilloplasma, Photobacterium, and Aeromonas, were overrepresented in WFS, whereas 11 genera, including Shewanella, Chitinibacter, and Rhodobacter were enriched in control. The divergent changes in these populations might contribute the observation that a decline of pathways conferring lipoic acid metabolism and mineral absorption in WFS. Meanwhile, some sorts of metabolites, especially lipids and organic acids, were found to be related to the IM alteration in WFS. Integrated with multiomics and IMT, we demonstra...Continue Reading

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Citations

Jun 10, 2020·Applied Microbiology and Biotechnology·Wenfang DaiChunlin Wang
Apr 25, 2020·Journal of Invertebrate Pathology·Corey C HoltMark van der Giezen
Jan 28, 2021·Animal Microbiome·Thibault P R A LegrandAndrew P A Oxley
Jun 8, 2021·Applied Microbiology and Biotechnology·Dongwei HouZhijian Huang
Jun 11, 2021·Developmental and Comparative Immunology·Hui ZhouDefu Yao
Aug 7, 2021·Journal of Animal Physiology and Animal Nutrition·Arvind D DiwanArchana N Panche

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Methods Mentioned

BETA
light microscopy
Illumina
PCR

Software Mentioned

BBMap
Picante
randomForest
QIIME
MEGAHIT
Cytoscape
DIAMOND
vegan package
PerMANOVA
vegan

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