miRNA-mRNA Interaction Network in Non-small Cell Lung Cancer

Interdisciplinary Sciences, Computational Life Sciences
Ruiqi MaJianzhen Xu

Abstract

MicroRNAs (miRNAs) are small RNA molecules, about 20-25 nucleotides in length. They repress or degrade messenger RNA (mRNA) translation, which are involved in human cancer. In this study based on paired miRNA and mRNA expression profiles of non-small cell lung cancer samples, we constructed and analyzed miRNA-mRNA interaction network via several bioinformatics softwares and platforms. This integrative network is comprised of 249 nodes for mRNA, 90 nodes for miRNA and 290 edges that show regulations between target genes and miRNAs. The three miR-1207-5p, miR-1228* and miR-939 are the most connected miRNA that regulated a large number of genes. ST8SIA2, MED1 and HDAC4, SPN, which are targeted by multiple miRNAs and located in the center of the network, are involved in both lung cancer and nervous system via functional annotation analysis. Such a global interaction network of miRNA-mRNA in lung cancer will contribute to refining miRNA target predictions and developing novel therapeutic candidates.

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Citations

Aug 25, 2015·Acta Pharmacologica Sinica·Ming-hui LiHua-sheng Xiao
Jul 20, 2019·Cancer Biomarkers : Section a of Disease Markers·Xia HanBaosheng Li
Dec 8, 2019·Interdisciplinary Sciences, Computational Life Sciences·Peng ZhangChanjuan Liu
May 13, 2017·Oncology Reports·Guang-Jian LiYun-Chao Huang
Jun 11, 2019·Molecular Medicine Reports·Guoqing YinJia Li
Dec 16, 2018·Biomedicine & Pharmacotherapy = Biomédecine & Pharmacothérapie·Tongbo YiLan Ge
Apr 17, 2021·FASEB Journal : Official Publication of the Federation of American Societies for Experimental Biology·Tianyi GuLungen Lu

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